Co-expression analysis

Gene ID Zm.1960.1.A1_at
Gene name palmitoyltransferase swf1
Homology with ArabidopsisSimilar to At3g04970: zinc finger (DHHC type) family protein (HF=4e-1)
Module size 6 genes
NF 0.65
%ile 86.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4455.70.98Zm.1960.1.A1_atAW566154palmitoyltransferase swf1-4e-1At3g04970zinc finger (DHHC type) family proteinO.I.H.G.S.X.
0.7389.90.97Zm.15437.1.S1_atCD219447hypothetical protein LOC100191830-6e+0At5g3767015.7 kDa class I-related small heat shock protein-like (HSP15.7-CI)O.I.H.G.S.X.
0.7389.90.98ZmAffx.834.1.A1_atAI770566--8e-1At1g54420unknown proteinO.I.H.G.S.X.
0.7188.20.98ZmAffx.757.1.A1_atAI745972--3e+0At4g32960unknown proteinO.I.H.G.S.X.
0.4658.40.98Zm.1342.1.S1_atBG842254--4e-5At1g23230unknown proteinO.I.H.G.S.X.
0.4048.50.98Zm.13366.1.A1_a_atCF634270--3e-1At3g45960ATEXLA3 (arabidopsis thaliana expansin-like a3)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.598.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.497.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM253280ZM_8d_SG200_3Alu_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
6.197.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM253281ZM_8d_SG200_3Alu_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
5.597.1GSM253282ZM_8d_SG200_3Alu_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig10812_at, orthologous to the query gene, Zm.1960.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.1Contig10812_atAt3g04970--2e+0At1g54410dehydrin family proteinO.I.H.G.S.X.
0.2732.1Contig10043_atAt3g04970--8e-38At5g13280AK-LYS1 (ASPARTATE KINASE 1)O.I.H.G.S.X.
0.2224.2Contig9520_atAt3g04970--4e-4At5g46160ribosomal protein L14 family protein / huellenlos paralog (HLP)O.I.H.G.S.X.
0.054.1Contig6376_atAt3g04970--1e-10At5g09900EMB2107 (EMBRYO DEFECTIVE 2107)O.I.H.G.S.X.
0.054.1Contig18946_atAt3g04970--1e+0At5g65220ribosomal protein L29 family proteinO.I.H.G.S.X.
0.043.4HVSMEm0005B11r2_x_atAt3g04970--4e+0At2g36020HVA22J (HVA22-LIKE PROTEIN J)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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