Co-expression analysis

Gene ID	Zm.1960.1.A1_at
Gene name	palmitoyltransferase swf1
Homology with Arabidopsis	Similar to At3g04970: zinc finger (DHHC type) family protein (HF=4e-1)
Module size	6 genes
NF	0.65
%ile	86.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	55.7	0.98	Zm.1960.1.A1_at	AW566154	palmitoyltransferase swf1	-	4e-1	At3g04970	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.97	Zm.15437.1.S1_at	CD219447	hypothetical protein LOC100191830	-	6e+0	At5g37670	15.7 kDa class I-related small heat shock protein-like (HSP15.7-CI)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.98	ZmAffx.834.1.A1_at	AI770566	-	-	8e-1	At1g54420	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.98	ZmAffx.757.1.A1_at	AI745972	-	-	3e+0	At4g32960	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.98	Zm.1342.1.S1_at	BG842254	-	-	4e-5	At1g23230	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.13366.1.A1_a_at	CF634270	-	-	3e-1	At3g45960	ATEXLA3 (arabidopsis thaliana expansin-like a3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.5	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
6.1	97.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
5.5	97.1	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.58273.1.S1_at, orthologous to the query gene, Zm.1960.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	93.2	GmaAffx.58273.1.S1_at	At3g04970	-	-	4e-10	At2g45750	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.2962.1.S1_at	At3g04970	-	-	1e-20	At2g28550	RAP2.7 (RELATED TO AP2.7)	O.I.	H.G.	S.X.	Please select
0.32	43.7	GmaAffx.16452.1.S1_at	At3g04970	-	-	6e+0	At5g57500	transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please select
0.31	42.2	GmaAffx.13036.1.A1_at	At3g04970	-	-	5e+0	At5g28770	BZO2H3	O.I.	H.G.	S.X.	Please select
0.30	40.4	Gma.607.1.S1_at	At3g04970	-	-	3e-2	At5g36940	CAT3 (CATIONIC AMINO ACID TRANSPORTER 3)	O.I.	H.G.	S.X.	Please select
0.24	30.9	GmaAffx.85012.1.S1_at	At3g04970	-	-	1e-9	At1g32050	secretory carrier membrane protein (SCAMP) family protein	O.I.	H.G.	S.X.	Please select
0.23	29.9	GmaAffx.86390.1.S1_x_at	At3g04970	-	-	9e-1	At1g31040	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	26.6	Gma.11376.1.A1_at	At3g04970	-	-	3e+0	At5g40900	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	Gma.9688.4.S1_at	At3g04970	-	-	9e-67	At1g53165	ATMAP4K ALPHA1	O.I.	H.G.	S.X.	Please select
0.17	21.2	GmaAffx.66861.1.S1_at	At3g04970	-	-	4e+0	At2g26500	cytochrome b6f complex subunit (petM), putative	O.I.	H.G.	S.X.	Please select
0.16	19.7	GmaAffx.22197.1.S1_at	At3g04970	-	-	3e-1	At5g10680	calmodulin-binding protein-related	O.I.	H.G.	S.X.	Please select
0.15	18.7	GmaAffx.82310.1.S1_at	At3g04970	-	-	3e-7	At5g42560	abscisic acid-responsive HVA22 family protein	O.I.	H.G.	S.X.	Please select
0.15	18.7	GmaAffx.83818.1.S1_at	At3g04970	-	-	9e-1	At3g09290	TAC1 (TELOMERASE ACTIVATOR1)	O.I.	H.G.	S.X.	Please select
0.15	18.7	GmaAffx.90341.1.S1_at	At3g04970	endo-1,4-beta-glucancase precursor	-	1e-46	At5g49720	ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)	O.I.	H.G.	S.X.	Please select
0.13	16.3	GmaAffx.92508.1.S1_s_at	At3g04970	-	-	1e+0	At1g28310	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.12	15.1	Gma.9688.1.S1_at	At3g04970	-	-	4e-6	At3g15220	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.12	15.1	GmaAffx.66861.2.S1_at	At3g04970	-	-	4e-25	At1g70100	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	13.0	GmaAffx.90341.1.S1_s_at	At3g04970	endo-1,4-beta-glucancase precursor	-	1e-46	At5g49720	ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)	O.I.	H.G.	S.X.	Please select
0.09	12.0	GmaAffx.16792.1.S1_at	At3g04970	-	-	4e-21	At2g26640	KCS11 (3-KETOACYL-COA SYNTHASE 11)	O.I.	H.G.	S.X.	Please select
0.07	10.2	Gma.8096.2.S1_at	At3g04970	-	-	5e-32	At2g20190	CLASP (CLIP-ASSOCIATED PROTEIN)	O.I.	H.G.	S.X.	Please select
0.05	8.0	GmaAffx.49350.2.S1_at	At3g04970	-	-	9e-1	At3g55490	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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