Co-expression analysis

Gene ID Zm.19325.1.S1_at
Gene name hypothetical protein LOC100191211
Homology with ArabidopsisSimilar to At1g45249: ABF2 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 2) (HF=5e-5)
Module size 6 genes
NF 0.05
%ile 2.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7792.10.93Zm.19325.1.S1_atCO528653hypothetical protein LOC100191211-5e-5At1g45249ABF2 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 2)O.I.H.G.S.X.
0.6381.10.93Zm.19324.1.A1_atCK986141hypothetical protein LOC100279823-6e-3At3g13065SRF4 (STRUBBELIG-RECEPTOR FAMILY 4)O.I.H.G.S.X.
0.072.90.95Zm.18438.1.S1_atCD97919150S ribosomal protein L11-1e-1At1g32990PRPL11 (PLASTID RIBOSOMAL PROTEIN L11)O.I.H.G.S.X.
0.062.30.95Zm.4592.1.A1_atBM348651hypothetical protein LOC100275868-8e+0At5g39690ANAC093 (Arabidopsis NAC domain containing protein 93)O.I.H.G.S.X.
0.051.90.95Zm.6712.1.A1_atAI734734--1e-54At2g32670ATVAMP725O.I.H.G.S.X.
0.020.70.94Zm.6045.7.A1_a_atCK347781hypothetical protein LOC100216946 /// guanine nucleotide-binding protein beta subunit-like protein-3e-8At1g18080ATARCAO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.799.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.599.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.599.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.698.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.398.5GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.798.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.298.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.198.4GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.798.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM290553WS1 with array type maize from AffymetrixGSE11531Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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