Co-expression analysis

Gene ID	Zm.19318.1.S1_at
Gene name	CMO protein
Homology with Arabidopsis	Similar to At4g29890: choline monooxygenase, putative (CMO-like) (HF=8e-1)
Module size	12 genes
NF	0.49
%ile	62.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.58	75.1	0.90	Zm.19318.1.S1_at	CO532290	CMO protein	-	8e-1	At4g29890	choline monooxygenase, putative (CMO-like)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.94	Zm.11893.1.A1_at	AY107653.1	hypothetical protein LOC100273477	-	5e+0	At3g49470	NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.93	Zm.14898.1.A1_at	BM351319	hypothetical protein LOC100193737	-	4e+0	At3g43800	ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.94	Zm.13146.1.A1_at	AY106044.1	hypothetical protein LOC100272292	-	1e-2	At2g30920	ATCOQ3 (ARABDIOPSIS THALIANA COENZYME Q 3)	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.93	Zm.9383.1.A1_at	BM268466	-	-	8e+0	At3g44935	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.95	Zm.79.1.S1_at	BM416702	beta 2 tubulin (AA 1-444)	-	8e-137	At5g62690	TUB2	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.95	Zm.19047.1.S1_at	CO520935	hypothetical protein LOC100275653	-	9e-1	At2g47900	AtTLP3 (TUBBY LIKE PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.95	Zm.12069.3.A1_x_at	CF631890	hypothetical protein LOC100193270	-	1e+1	At5g36900	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.95	Zm.18516.1.A1_a_at	CO526437	-	-	2e+0	At5g55570	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.94	Zm.12598.1.S1_at	BU037415	-	-	1e+0	At2g30933	-	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.94	ZmAffx.76.1.A1_at	AI665214	-	-	3e+0	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.96	Zm.11383.1.A1_at	BM350192	-	-	1e+0	At1g47980	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.5	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6	92.9	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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