Co-expression analysis

Gene ID Zm.19304.1.A1_at
Gene name hypothetical protein LOC100192965
Homology with ArabidopsisSimilar to At1g55230: unknown protein (HF=3e-1)
Module size 30 genes
NF 0.41
%ile 46.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8896.70.97Zm.19304.1.A1_atCO525321hypothetical protein LOC100192965-3e-1At1g55230unknown proteinO.I.H.G.S.X.
0.5674.40.96Zm.19127.1.A1_atAY110588.1--2e-3At4g01660ATABC1 (ARABIDOPSIS THALIANA ABC TRANSPORTER 1)O.I.H.G.S.X.
0.5571.60.97Zm.4122.1.S1_atAY107878.1--2e+0At5g07490unknown proteinO.I.H.G.S.X.
0.5369.10.97Zm.12930.1.S1_atCA403471hypothetical protein LOC100191377-3e-3At4g31790diphthine synthase, putative (DPH5)O.I.H.G.S.X.
0.5369.10.97Zm.11661.1.A1_atBM379776--1e+0At3g24570peroxisomal membrane 22 kDa family proteinO.I.H.G.S.X.
0.5369.10.97Zm.9267.1.A1_atBM267708hypothetical protein AY107012 /// UPF0497 membrane protein 7-2e+0At2g36210auxin-responsive family proteinO.I.H.G.S.X.
0.5369.10.97Zm.2147.1.A1_a_atBM380613glycine-rich cell wall structural protein-4e-1At4g01995unknown proteinO.I.H.G.S.X.
0.4961.90.98Zm.11547.1.S1_atCA827895hypothetical protein LOC100276375-1e+1At5g4152040S ribosomal protein S10 (RPS10B)O.I.H.G.S.X.
0.4759.90.96Zm.13869.1.S1_x_atAF099436.1R2R3MYB-domain protein-4e+0At2g04910glycosyl hydrolase family protein 17O.I.H.G.S.X.
0.4759.90.97Zm.6333.1.A1_atAY109180.1transaminase/ transferase, transferring nitrogenous groups-5e-7At4g33680AGD2 (ABERRANT GROWTH AND DEATH 2)O.I.H.G.S.X.
0.4556.40.98Zm.18278.1.S1_atCK371368--1e-26At3g52200LTA3O.I.H.G.S.X.
0.4455.70.97Zm.3385.1.A1_atAW066673C2H2 zinc finger protein-7e-1At4g18930cyclic phosphodiesteraseO.I.H.G.S.X.
0.4455.70.97Zm.14622.2.S1_atCO534180ubiquinone biosynthesis methyltransferase COQ5-1e-5At5g57300UbiE/COQ5 methyltransferase family proteinO.I.H.G.S.X.
0.4251.30.96Zm.2614.2.S1_atCD436098--2e+0At5g17930binding / protein bindingO.I.H.G.S.X.
0.4149.70.97Zm.6583.1.A1_atAY111761.1hypothetical protein LOC100273289-2e-3At3g45000VPS24.2O.I.H.G.S.X.
0.4048.50.97Zm.17724.1.S1_a_atCF623515hypothetical protein LOC100278419-1e+0At3g56240CCH (COPPER CHAPERONE)O.I.H.G.S.X.
0.3945.60.97Zm.17516.1.S1_atCF623514hypothetical protein LOC100216611-3e-12At5g63650SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)O.I.H.G.S.X.
0.3844.20.97Zm.6228.1.A1_atAI739920--1e+0At1g64370unknown proteinO.I.H.G.S.X.
0.3844.20.97Zm.4812.1.A1_atBG873771--6e+0At5g26220ChaC-like family proteinO.I.H.G.S.X.
0.3742.30.97Zm.7858.1.A1_atAY108500.1--3e-3At1g70940PIN3 (PIN-FORMED 3)O.I.H.G.S.X.
0.3641.30.97ZmAffx.601.1.A1_atAI715029--8e-1At1g35430unknown proteinO.I.H.G.S.X.
0.3641.30.97Zm.1967.2.A1_atCF637323pre-mRNA-splicing factor prp45-6e-26At1g77180chromatin protein familyO.I.H.G.S.X.
0.3336.00.97Zm.3735.1.A1_atAY107167.1hypothetical protein LOC100277155-5e-8At4g39860unknown proteinO.I.H.G.S.X.
0.3336.00.97Zm.1874.1.A1_atCF007505NADH-ubiquinone oxidoreductase 18 kDa subunit-3e-11At5g67590FRO1 (FROSTBITE1)O.I.H.G.S.X.
0.3233.40.97Zm.439.1.A1_atAF058708.1RNA polymerase sigma factor 1-3e+0At1g64860SIGA (SIGMA FACTOR A)O.I.H.G.S.X.
0.3233.40.97Zm.10393.1.S1_atAI676981--2e+0At5g11425unknown proteinO.I.H.G.S.X.
0.3233.40.97ZmAffx.1160.1.A1_atAW438281--1e+1At1g24060unknown proteinO.I.H.G.S.X.
0.3131.60.97Zm.14411.1.A1_a_atAI491646membrane steroid-binding protein 1-7e-16At3g48890ATMP2O.I.H.G.S.X.
0.2622.70.98Zm.3707.1.A1_atAY107773.1vacuolar cation/proton exchanger 2-1e-4At3g13320CAX2 (CATION EXCHANGER 2)O.I.H.G.S.X.
0.2216.90.97Zm.11992.1.A1_atBM382475--3e+0At5g41614unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.799.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.799.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.298.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.198.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.598.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.298.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.898.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.391.7GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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