Co-expression analysis

Gene ID Zm.19297.1.A1_at
Gene name hypothetical protein LOC100193577
Homology with ArabidopsisSimilar to At3g49800: BSD domain-containing protein (HF=2e-2)
Module size 17 genes
NF 0.31
%ile 29.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8294.60.93Zm.19297.1.A1_atCO524882hypothetical protein LOC100193577-2e-2At3g49800BSD domain-containing proteinO.I.H.G.S.X.
0.4149.70.93Zm.17539.1.S1_atCK369152--3e-5At3g01540DRH1 (DEAD BOX RNA HELICASE 1)O.I.H.G.S.X.
0.3742.30.95ZmAffx.189.2.A1_a_atAI668397hypothetical protein LOC100278348-8e-1At1g70510KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2)O.I.H.G.S.X.
0.3641.30.96Zm.5789.10.A1_x_atAI737302hypothetical protein LOC100192516-6e-14At1g43170ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)O.I.H.G.S.X.
0.3336.00.95Zm.858.1.A1_atBM073310hypothetical protein LOC100216691-2e+0At4g12350MYB42 (myb domain protein 42)O.I.H.G.S.X.
0.3336.00.96Zm.564.1.S1_a_atAF244704.1glutathione S-transferase GST 39-3e-2At2g36640ATECP63 (EMBRYONIC CELL PROTEIN 63)O.I.H.G.S.X.
0.3233.40.95ZmAffx.530.1.S1_a_atAI711707--9e-16At5g53400nuclear movement family proteinO.I.H.G.S.X.
0.3233.40.96Zm.18504.1.A1_atCF626348hypothetical protein LOC100279335-2e+0At4g12490protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.3233.40.96Zm.17983.1.A1_atBG840853hypothetical protein LOC100276768-1e+0At2g40910F-box protein-relatedO.I.H.G.S.X.
0.3131.60.95Zm.10105.1.A1_atBM379807--5e+0At4g11870unknown proteinO.I.H.G.S.X.
0.3131.60.96Zm.17562.1.S1_atCF040421hypothetical protein LOC100280253-5e+0At1g48330unknown proteinO.I.H.G.S.X.
0.2928.10.96Zm.13885.1.A1_s_atAF099413.1R2R3MYB-domain protein-2e-1At3g46130MYB111 (MYB DOMAIN PROTEIN 111)O.I.H.G.S.X.
0.2419.80.96Zm.11806.1.S1_atBM380898thylakoid lumenal 16.5 kDa protein-6e+0At5g42146unknown proteinO.I.H.G.S.X.
0.2014.20.97Zm.1937.1.S1_atCN845484hypothetical protein LOC100277662-5e+0At3g50800unknown proteinO.I.H.G.S.X.
0.1710.60.95Zm.4724.1.A1_atCA400286UPF0737 protein 7-9e-3At4g28910-O.I.H.G.S.X.
0.169.40.95Zm.5155.1.S1_atCD433333hypothetical protein LOC100193357-7e-20At5g27740EMB2775 (EMBRYO DEFECTIVE 2775)O.I.H.G.S.X.
0.136.80.95Zm.19167.1.A1_atAI629472hypothetical protein LOC100194096-1e-17At4g10000electron carrier/ protein disulfide oxidoreductaseO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.698.4GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.798.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.598.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.097.7GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.595.1GSM253270ZM_4.5d_Mock_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage