Co-expression analysis

Gene ID Zm.19269.1.A1_at
Gene name hypothetical protein LOC100275524
Homology with ArabidopsisSimilar to At1g53120: RNA-binding S4 domain-containing protein (HF=3e-1)
Module size 20 genes
NF 0.43
%ile 50.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8194.30.97Zm.19269.1.A1_atCO521789hypothetical protein LOC100275524-3e-1At1g53120RNA-binding S4 domain-containing proteinO.I.H.G.S.X.
0.7087.00.98--O.I.H.G.S.X.
0.5369.10.98Zm.4780.1.S1_atCF057781--3e+0At4g31580SRZ-22O.I.H.G.S.X.
0.5267.30.98Zm.10091.1.A1_atBM382104hypothetical protein LOC100277849-6e+0At4g16520ATG8F (autophagy 8f)O.I.H.G.S.X.
0.5166.40.97ZmAffx.528.1.A1_atAI711688--2e-1At1g80420DNA repair protein, putative (XRCC1)O.I.H.G.S.X.
0.4759.90.98Zm.4109.1.A1_atCD441071NADP-dependent D-sorbitol-6-phosphate dehydrogenase /// NADP-dependent D-sorbitol-6-phosphate dehydrogenase-7e-38At2g21250mannose 6-phosphate reductase (NADPH-dependent), putativeO.I.H.G.S.X.
0.4658.40.99Zm.15979.1.A1_atAW091403hypothetical protein LOC100277589-8e-2At3g10750-O.I.H.G.S.X.
0.4352.80.98ZmAffx.1283.1.S1_at40794996-131--9e-1At1g32470glycine cleavage system H protein, mitochondrial, putativeO.I.H.G.S.X.
0.4149.70.98ZmAffx.88.1.A1_s_atAI665347carnitine racemase/ catalytic-3e+0At5g35375unknown proteinO.I.H.G.S.X.
0.3945.60.99ZmAffx.954.1.S1_atAI833471--3e+0At1g26480GRF12 (GENERAL REGULATORY FACTOR 12)O.I.H.G.S.X.
0.3945.60.98Zm.8868.1.A1_atBM335939hypothetical protein LOC100275200-2e+0At3g05000transport protein particle (TRAPP) component Bet3 family proteinO.I.H.G.S.X.
0.3742.30.99Zm.16469.1.S1_atCF650934--3e-4At3g15352ATCOX17O.I.H.G.S.X.
0.3742.30.99ZmAffx.902.1.A1_atAI770904Hypothetical protein LOC100191467-3e+0At4g16640matrix metalloproteinase, putativeO.I.H.G.S.X.
0.3538.90.98ZmAffx.610.1.A1_atAI715038--1e+1At5g07190ATS3 (ARABIDOPSIS THALIANA SEED GENE 3)O.I.H.G.S.X.
0.3538.90.99Zm.12454.1.A1_atCF629114hypothetical protein LOC100273736-6e-3At1g10640polygalacturonaseO.I.H.G.S.X.
0.3437.20.98Zm.11590.1.A1_atBM379183leucoanthocyanidin dioxygenase-5e-3At5g20400oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.3233.40.98ZmAffx.1075.1.A1_atAI947879--1e+1At5g10130pollen Ole e 1 allergen and extensin family proteinO.I.H.G.S.X.
0.2928.10.98ZmAffx.764.1.A1_atAI746075hypothetical protein LOC100191363-3e+0At2g31215basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.2928.10.98ZmAffx.929.1.S1_atAI795460--5e-2At5g17900-O.I.H.G.S.X.
0.2724.60.98Zm.3865.2.A1_atCF625226--5e-54At4g16155dihydrolipoyl dehydrogenaseO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.198.7GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.498.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.198.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.497.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.497.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.291.3GSM205370B73 13 DAP endosperm tissue biological replicate 2GSE8275Non-additive and imprinted gene expression in hybrid maize endosperm_13DAPLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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