CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.19240.1.A1_at

Gene name DNA binding protein
Homology with Arabidopsis Similar to At5g54490: PBP1 (PINOID-BINDING PROTEIN 1) (HF=1e+0)

Module size 6 genes

NF 0.59

%ile 79.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 79.5 0.93 Zm.19240.1.A1_at CF624777 DNA binding protein - 1e+0 At5g54490 PBP1 (PINOID-BINDING PROTEIN 1) O.I. H.G. S.X.
0.60 77.8 0.94 Zm.537.2.S1_at CF054696 hypothetical protein LOC100273405 - 1e-46 At4g02930 elongation factor Tu, putative / EF-Tu, putative O.I. H.G. S.X.
0.60 77.8 0.94 Zm.4255.1.A1_at AY112172.1 - - 2e+0 At5g23750 remorin family protein O.I. H.G. S.X.
0.57 75.1 0.94 Zm.12936.1.A1_at AY108987.1 - - 7e-1 At3g21338 unknown protein O.I. H.G. S.X.
0.50 65.7 0.95 Zm.2768.1.A1_at AW067159 Hypothetical protein LOC100193535 - 1e+0 At5g04760 myb family transcription factor O.I. H.G. S.X.
0.40 48.5 0.94 Zm.12977.2.S1_at AI677017 Hypothetical protein LOC100193319 - 5e-5 At1g15370 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.89	Zm.5668.1.S1_at	CO525286	hypothetical protein LOC100193892	-	7e-4	At2g43030	ribosomal protein L3 family protein	O.I.	H.G.	S.X.
0.53	69.1	0.93	Zm.17312.1.A1_at	CK369501	-	-	5e+0	At5g39700	MYB89 (myb domain protein 89)	O.I.	H.G.	S.X.
0.44	55.7	0.92	Zm.17361.1.S1_at	CK370908	-	-	5e-19	At3g55320	PGP20 (P-GLYCOPROTEIN 20)	O.I.	H.G.	S.X.
0.44	55.7	0.93	Zm.3498.1.A1_a_at	CK367906	metallothionein1	-	2e+0	At5g64690	neurofilament triplet H protein-related	O.I.	H.G.	S.X.
0.40	48.5	0.93	Zm.18672.1.A1_at	CO522055	hypothetical protein LOC100273696	-	6e+0	At5g26960	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.
0.38	44.2	0.86	Zm.782.1.A1_at	CA404412	hypothetical protein LOC100273031	-	4e-30	At2g27680	aldo/keto reductase family protein	O.I.	H.G.	S.X.
0.38	44.2	0.91	ZmAffx.61.1.S1_at	AI665105	-	-	9e-13	At5g62840	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.
0.36	41.3	0.90	Zm.476.1.S1_at	AF003551.2	lysine-ketoglutarate reductase/saccharopine dehydr	-	3e-8	At4g33150	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme	O.I.	H.G.	S.X.
0.36	41.3	0.92	Zm.13483.1.S1_at	CO528023	Hypothetical protein LOC100192840	-	2e+0	At3g29970	germination protein-related	O.I.	H.G.	S.X.
0.32	33.4	0.88	Zm.4619.3.A1_at	AI737367	-	-	8e-1	At3g53470	unknown protein	O.I.	H.G.	S.X.
0.32	33.4	0.91	Zm.6009.1.A1_x_at	BM348378	hypothetical protein LOC100274708	-	2e+0	At1g74730	unknown protein	O.I.	H.G.	S.X.
0.31	31.6	0.94	Zm.12511.1.S1_at	AW062063	hypothetical protein LOC100276976	-	5e+0	At5g53110	-	O.I.	H.G.	S.X.
0.30	29.8	0.92	Zm.1079.4.S1_x_at	AY109373.1	-	-	2e-2	At5g14740	CA2 (CARBONIC ANHYDRASE 2)	O.I.	H.G.	S.X.
0.29	28.1	0.89	Zm.13661.1.A1_at	AY107142.1	-	-	2e+0	At4g25710	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.
0.28	28.1	0.88	Zm.11731.1.A1_at	BM380291	helix-loop-helix DNA-binding domain containing protein	-	5e-9	At4g09180	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.
0.26	22.7	0.89	Zm.144.1.S1_x_at	U10696.1	metallothionein2	-	2e+1	At5g38344	transmembrane receptor	O.I.	H.G.	S.X.
0.25	21.3	0.87	Zm.19055.1.A1_at	CO520813	Protein kinase catalytic domain	-	2e+0	At5g20670	unknown protein	O.I.	H.G.	S.X.
0.25	21.3	0.88	Zm.17754.1.A1_at	CK826899	-	-	2e+0	At4g17310	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.8 98.7 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9 97.9 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6 97.9 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1 97.7 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0 97.7 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0 97.7 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4 97.5 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4 97.5 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2 97.4 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1 97.4 GSM253272 ZM_4.5d_SG200_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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