Co-expression analysis

Gene ID	Zm.19240.1.A1_at
Gene name	DNA binding protein
Homology with Arabidopsis	Similar to At5g54490: PBP1 (PINOID-BINDING PROTEIN 1) (HF=1e+0)
Module size	6 genes
NF	0.59
%ile	79.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	79.5	0.93	Zm.19240.1.A1_at	CF624777	DNA binding protein	-	1e+0	At5g54490	PBP1 (PINOID-BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.94	Zm.537.2.S1_at	CF054696	hypothetical protein LOC100273405	-	1e-46	At4g02930	elongation factor Tu, putative / EF-Tu, putative	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.94	Zm.4255.1.A1_at	AY112172.1	-	-	2e+0	At5g23750	remorin family protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.94	Zm.12936.1.A1_at	AY108987.1	-	-	7e-1	At3g21338	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.95	Zm.2768.1.A1_at	AW067159	Hypothetical protein LOC100193535	-	1e+0	At5g04760	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.94	Zm.12977.2.S1_at	AI677017	Hypothetical protein LOC100193319	-	5e-5	At1g15370	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.8	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM253272	ZM_4.5d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the wheat gene, Ta.3242.2.S1_at, orthologous to the query gene, Zm.19240.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.85	93.8	Ta.3242.2.S1_at	At5g54490	-	-	4e-21	At1g01520	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.4044.1.S1_at	At5g54490	-	-	3e-2	At5g49550	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.10246.1.S1_at	At5g54490	-	-	1e-8	At5g65720	NFS1	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.10821.1.S1_at	At5g54490	-	-	1e-1	At3g61113	-	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.6933.1.S1_at	At5g54490	-	-	4e-12	At5g47730	SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.3054.1.A1_s_at	At5g54490	-	-	3e-1	At2g28930	APK1B	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.2593.2.S1_at	At5g54490	-	-	1e-25	At5g62000	ARF2 (AUXIN RESPONSE FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.18	21.0	Ta.7292.1.S1_at	At5g54490	-	-	1e-1	At3g15490	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	Ta.1552.1.S1_at	At5g54490	-	-	1e-8	At3g21175	ZML1 (ZIM-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.18	21.0	Ta.1601.1.S1_at	At5g54490	-	-	1e-34	At1g43710	emb1075 (embryo defective 1075)	O.I.	H.G.	S.X.	Please select
0.17	19.8	TaAffx.4201.1.A1_at	At5g54490	-	-	8e+0	At5g17870	PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.16	18.2	Ta.2593.2.S1_x_at	At5g54490	-	-	1e-25	At5g62000	ARF2 (AUXIN RESPONSE FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.16	18.2	Ta.12751.1.S1_at	At5g54490	-	-	3e-10	At5g49820	emb1879 (embryo defective 1879)	O.I.	H.G.	S.X.	Please select
0.16	18.2	TaAffx.5323.1.S1_at	At5g54490	-	-	4e-6	At4g32600	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	Ta.8178.1.S1_at	At5g54490	-	-	1e+0	At5g54230	MYB49 (myb domain protein 49)	O.I.	H.G.	S.X.	Please select
0.14	15.8	Ta.21132.3.S1_a_at	At5g54490	-	-	1e+0	At3g15960	ATP binding / mismatched DNA binding	O.I.	H.G.	S.X.	Please select
0.14	15.8	Ta.3716.1.S1_at	At5g54490	RUB1-conjugating enzyme	-	2e-12	At2g18600	RUB1-conjugating enzyme, putative	O.I.	H.G.	S.X.	Please select
0.14	15.8	TaAffx.131691.1.S1_at	At5g54490	-	-	5e+0	At2g21150	XCT (XAP5 CIRCADIAN TIMEKEEPER)	O.I.	H.G.	S.X.	Please select
0.13	14.6	Ta.4326.1.A1_at	At5g54490	-	-	5e+0	At4g34750	auxin-responsive protein, putative / small auxin up RNA (SAUR_E)	O.I.	H.G.	S.X.	Please select
0.13	14.6	Ta.3794.1.S1_at	At5g54490	-	-	7e+0	At3g04943	LCR41 (Low-molecular-weight cysteine-rich 41)	O.I.	H.G.	S.X.	Please select
0.12	13.3	Ta.30710.2.S1_a_at	At5g54490	-	-	1e+0	At1g68310	vacuolar sorting signal binding	O.I.	H.G.	S.X.	Please select
0.11	12.4	Ta.14476.2.S1_at	At5g54490	-	-	3e-3	At2g40960	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.10	11.3	Ta.30793.1.S1_x_at	At5g54490	-	-	1e-4	At5g46030	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	10.4	Ta.21959.1.S1_at	At5g54490	-	-	7e-23	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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