Co-expression analysis

Gene ID Zm.19240.1.A1_at
Gene name DNA binding protein
Homology with ArabidopsisSimilar to At5g54490: PBP1 (PINOID-BINDING PROTEIN 1) (HF=1e+0)
Module size 6 genes
NF 0.59
%ile 79.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6179.50.93Zm.19240.1.A1_atCF624777DNA binding protein-1e+0At5g54490PBP1 (PINOID-BINDING PROTEIN 1)O.I.H.G.S.X.
0.6077.80.94Zm.537.2.S1_atCF054696hypothetical protein LOC100273405-1e-46At4g02930elongation factor Tu, putative / EF-Tu, putativeO.I.H.G.S.X.
0.6077.80.94Zm.4255.1.A1_atAY112172.1--2e+0At5g23750remorin family proteinO.I.H.G.S.X.
0.5775.10.94Zm.12936.1.A1_atAY108987.1--7e-1At3g21338unknown proteinO.I.H.G.S.X.
0.5065.70.95Zm.2768.1.A1_atAW067159Hypothetical protein LOC100193535-1e+0At5g04760myb family transcription factorO.I.H.G.S.X.
0.4048.50.94Zm.12977.2.S1_atAI677017Hypothetical protein LOC100193319-5e-5At1g15370-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.898.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.997.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.097.7GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.097.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.297.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM253272ZM_4.5d_SG200_3inf_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.202373.1.S1_at, orthologous to the query gene, Zm.19240.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.3863.7PtpAffx.202373.1.S1_atAt5g54490cytochrome P450-7e-1At4g14270-O.I.H.G.S.X.
0.1423.5PtpAffx.210497.1.S1_atAt5g54490hypothetical protein-1e-2At5g28630glycine-rich proteinO.I.H.G.S.X.
0.1219.6PtpAffx.221851.1.S1_atAt5g54490hypothetical protein-2e+0At1g11850unknown proteinO.I.H.G.S.X.
0.0812.9PtpAffx.93217.1.A1_atAt5g54490--4e+0At5g56150UBC30 (ubiquitin-conjugating enzyme 30)O.I.H.G.S.X.
0.069.8Ptp.6603.1.S1_atAt5g54490hypothetical protein-4e-1At5g40580PBB2O.I.H.G.S.X.
0.069.8PtpAffx.221205.1.S1_atAt5g54490hypothetical protein-8e+0At5g50760auxin-responsive family proteinO.I.H.G.S.X.
0.058.3PtpAffx.26510.1.A1_s_atAt5g54490--5e-1At3g23245unknown proteinO.I.H.G.S.X.
0.046.9PtpAffx.222171.1.S1_atAt5g54490hypothetical protein-9e-10At2g03070unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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