Co-expression analysis

Gene ID	Zm.19240.1.A1_at
Gene name	DNA binding protein
Homology with Arabidopsis	Similar to At5g54490: PBP1 (PINOID-BINDING PROTEIN 1) (HF=1e+0)
Module size	6 genes
NF	0.59
%ile	79.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	79.5	0.93	Zm.19240.1.A1_at	CF624777	DNA binding protein	-	1e+0	At5g54490	PBP1 (PINOID-BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.94	Zm.537.2.S1_at	CF054696	hypothetical protein LOC100273405	-	1e-46	At4g02930	elongation factor Tu, putative / EF-Tu, putative	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.94	Zm.4255.1.A1_at	AY112172.1	-	-	2e+0	At5g23750	remorin family protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.94	Zm.12936.1.A1_at	AY108987.1	-	-	7e-1	At3g21338	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.95	Zm.2768.1.A1_at	AW067159	Hypothetical protein LOC100193535	-	1e+0	At5g04760	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.94	Zm.12977.2.S1_at	AI677017	Hypothetical protein LOC100193319	-	5e-5	At1g15370	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.8	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM253272	ZM_4.5d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage