Co-expression analysis

Gene ID Zm.19227.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g02540: short-chain dehydrogenase/reductase (SDR) family protein (HF=2e-7)
Module size 32 genes
NF 0.36
%ile 38.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8896.70.95Zm.19227.1.S1_atCO533358--2e-7At5g02540short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.5571.60.97Zm.18244.1.S1_atCN844522--3e+0At1g24260SEP3 (SEPALLATA3)O.I.H.G.S.X.
0.5267.30.97Zm.2631.1.S1_atAY107698.1hypothetical protein LOC100191885-5e-5At2g21730CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2)O.I.H.G.S.X.
0.5166.40.97Zm.9542.1.A1_atCF624708hypothetical protein LOC100192045-3e-16At4g16170unknown proteinO.I.H.G.S.X.
0.5065.70.96Zm.8321.1.S1_atCO528265calcium-dependent protein kinase, isoform AK1-3e+0At5g61350protein kinase family proteinO.I.H.G.S.X.
0.4861.30.96Zm.18541.1.S1_atCO528387hypothetical protein ache-3e-3At3g26430GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.4759.90.96Zm.17650.1.A1_atCK369077prolyl 4-hydroxylase-6e-4At2g23096oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.4455.70.97Zm.11551.1.A1_atAY108861.11-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imi dazole-4-carboxamide isomerase-4e-1At4g17960unknown proteinO.I.H.G.S.X.
0.4352.80.97Zm.1240.1.A1_atAI001233hypothetical protein LOC100274890-6e-3At3g29034unknown proteinO.I.H.G.S.X.
0.4251.30.97Zm.3780.3.S1_atCF008471--2e+0At1g29720protein kinase family proteinO.I.H.G.S.X.
0.4149.70.97Zm.19212.1.S1_atBE238501--1e-1At1g06160ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)O.I.H.G.S.X.
0.3945.60.97Zm.17192.1.A1_atBM339467--5e+0At2g22520unknown proteinO.I.H.G.S.X.
0.3844.20.96Zm.9828.1.A1_atBM340313zinc finger protein 7-3e-1At2g20260PSAE-2 (photosystem I subunit E-2)O.I.H.G.S.X.
0.3538.90.97Zm.9583.1.A1_atCB351275--1e+0At4g1317060S ribosomal protein L13A (RPL13aC)O.I.H.G.S.X.
0.3538.90.96Zm.478.1.A1_atAF225708.1CRS2-2e-7At5g16140peptidyl-tRNA hydrolase family proteinO.I.H.G.S.X.
0.3437.20.97Zm.18946.1.A1_atBM338625hypothetical protein LOC100278262-1e+0At1g69660meprin and TRAF homology domain-containing protein / MATH domain-containing proteinO.I.H.G.S.X.
0.3336.00.97Zm.10872.1.A1_atBM075104--1e-8At1g59990DEAD/DEAH box helicase, putative (RH22)O.I.H.G.S.X.
0.3233.40.97Zm.14324.1.A1_atAI391953ribonucleoside-diphosphate reductase small chain-5e-26At3g27060TSO2 (TSO meaning 'ugly' in Chinese)O.I.H.G.S.X.
0.3233.40.97Zm.7564.1.A1_atBM078962--4e-1At3g59060PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)O.I.H.G.S.X.
0.3233.40.97Zm.19300.1.S1_atCO522732DNA repair protein RAD51-3e+0At2g45280ATRAD51CO.I.H.G.S.X.
0.3233.40.97Zm.4420.1.S1_atCF628272hypothetical protein LOC100273293-4e-15At3g13450DIN4 (DARK INDUCIBLE 4)O.I.H.G.S.X.
0.3131.60.97Zm.9989.1.A1_atBM332236DNA binding protein-5e+0At5g03090unknown proteinO.I.H.G.S.X.
0.3131.60.96Zm.12993.1.A1_atCF632679hypothetical protein LOC100273862-3e-2At3g04380SUVR4O.I.H.G.S.X.
0.3131.60.96Zm.17565.1.A1_atCO525274hypothetical protein LOC100279752-1e+0At1g52855unknown proteinO.I.H.G.S.X.
0.3131.60.96Zm.9506.1.A1_atBM350931--9e-2At2g41230unknown proteinO.I.H.G.S.X.
0.3029.80.97Zm.16705.1.S1_atBM501579--3e-1At1g16430surfeit locus protein 5 family protein / SURF5 family proteinO.I.H.G.S.X.
0.2622.70.97Zm.6454.1.A1_atAY106137.1PP1/PP2A phosphatases pleiotropic regulator PRL1-9e-29At4g15900PRL1 (PLEIOTROPIC REGULATORY LOCUS 1)O.I.H.G.S.X.
0.2521.30.96Zm.326.1.S1_atAB042269.1response regulator 7-3e+0At5g41761unknown proteinO.I.H.G.S.X.
0.2419.80.97Zm.3775.1.A1_atAY103856.1chaperonin-3e-5At1g14980CPN10 (CHAPERONIN 10)O.I.H.G.S.X.
0.2318.60.96Zm.18825.1.A1_atCO527281hypothetical protein LOC100194340-8e+0At3g17675copper ion binding / electron carrierO.I.H.G.S.X.
0.2216.90.96Zm.2181.1.S1_atBF727788--9e-1At2g10602unknown proteinO.I.H.G.S.X.
0.2216.90.96Zm.7611.2.A1_atBM268818--2e-3At1g49400emb1129 (embryo defective 1129)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.599.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.498.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.898.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.997.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.897.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.696.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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