Co-expression analysis

Gene ID	Zm.19155.1.S1_at
Gene name	calcium-dependent protein kinase, isoform 2
Homology with Arabidopsis	Similar to At4g23650: CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) (HF=9e-29)
Module size	12 genes
NF	0.43
%ile	50.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	91.1	0.95	Zm.19155.1.S1_at	CA401905	calcium-dependent protein kinase, isoform 2	-	9e-29	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.96	Zm.1779.1.A1_at	CF020941	-	-	1e+1	At5g64020	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.96	Zm.6377.2.A1_a_at	AI691626	growth-regulating factor 10-like	-	1e+0	At2g36400	AtGRF3 (GROWTH-REGULATING FACTOR 3)	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.96	Zm.15490.1.A1_at	CD448845	subtilisin-chymotrypsin inhibitor CI-1B	-	4e+0	At5g38930	germin-like protein, putative	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.96	ZmAffx.592.1.S1_at	AI715020	-	-	1e+1	At3g12300	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.96	Zm.7364.1.A1_at	BM078096	-	-	2e+0	At5g25750	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.96	Zm.7671.1.A1_at	BM073122	hypothetical protein LOC100272470	-	8e-2	At4g00232	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.97	Zm.14760.1.A1_at	AY104289.1	Ubiquitin-conjugating enzyme E2	-	2e+0	At2g13980	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.97	Zm.3084.1.A1_at	CA404291	hypothetical protein LOC100216830	-	9e-1	At5g56600	PRF3 (PROFILIN 3)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.96	Zm.13185.1.A1_at	AY104045.1	-	-	1e-22	At3g13060	-	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.97	Zm.18819.1.S1_at	CO522421	hypothetical protein LOC100193533	-	1e+0	At5g65730	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.96	Zm.2836.1.A1_at	AY112208.1	-	-	5e+0	At2g30280	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.6	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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