Co-expression analysis

Gene ID	Zm.19103.1.S1_at
Gene name	hypothetical protein LOC100193224
Homology with Arabidopsis	Similar to At4g09490: RNase H domain-containing protein (HF=3e+0)
Module size	9 genes
NF	0.50
%ile	64.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.4	0.95	Zm.19103.1.S1_at	CF625279	hypothetical protein LOC100193224	-	3e+0	At4g09490	RNase H domain-containing protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.96	Zm.16394.1.S1_at	CF272871	-	-	1e-1	At2g03470	myb family transcription factor / ELM2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.96	Zm.17295.1.A1_at	CK347563	-	-	2e+0	At2g18050	HIS1-3 (HISTONE H1-3)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.96	Zm.306.1.S1_s_at	AF291748.1	HMGI/Y protein /// high mobility group I/Y-2	-	2e+0	At3g47620	AtTCP14 (TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14)	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.96	Zm.5851.6.A1_a_at	L46399.1	MADS box protein	-	2e-8	At4g18960	AG (AGAMOUS)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.96	Zm.19158.2.S1_a_at	BM073998	hypothetical protein LOC100273021 /// thioredoxin F-type	-	3e-11	At5g16400	ATF2	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.97	Zm.15085.1.A1_at	AI065806	-	-	4e-11	At4g14070	AAE15 (acyl-activating enzyme 15)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.96	Zm.6142.1.A1_at	AY105151.1	annexin p33	-	2e-1	At5g10220	ANN6 (ANNEXIN ARABIDOPSIS 6)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.96	Zm.4406.1.A1_at	AI834053	splicing factor, arginine/serine-rich 12	-	2e+0	At2g26695	binding / zinc ion binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.3	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.1	90.8	GSM206324	Upper pulvinus 2 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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