Co-expression analysis

Gene ID	Zm.19099.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g32650: - (HF=4e+0)
Module size	6 genes
NF	0.13
%ile	8.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.93	Zm.19099.1.S1_at	CO530975	-	-	4e+0	At2g32650	-	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.93	Zm.7559.1.A1_at	AY110410.1	-	-	6e-3	At5g48370	thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.93	ZmAffx.1110.1.A1_at	AW225256	-	-	8e-1	At5g06250	transcription factor	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.94	Zm.1228.2.A1_at	AI795581	Hypothetical protein LOC100191844	-	1e-34	At5g10840	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.08	3.4	0.93	Zm.15418.1.A1_at	AY109016.1	Hypothetical protein LOC100191383	-	1e+1	At5g43570	serine-type endopeptidase inhibitor	O.I.	H.G.	S.X.	Please select
0.05	1.9	0.93	ZmAffx.189.2.A1_a_at	AI668397	hypothetical protein LOC100278348	-	8e-1	At1g70510	KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.0	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.3633.1.S1_at, orthologous to the query gene, Zm.19099.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	Ptp.3633.1.S1_at	At2g32650	hypothetical protein	-	1e+0	At4g19060	disease resistance protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.217244.1.S1_at	At2g32650	hypothetical protein	-	5e-5	At3g13040	myb family transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.223948.1.S1_s_at	At2g32650	hypothetical protein	-	2e-1	At4g35100	PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.207981.1.S1_x_at	At2g32650	hypothetical protein	-	1e-1	At4g33800	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.213603.1.S1_at	At2g32650	hypothetical protein	-	4e+0	At5g37280	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.200789.1.S1_at	At2g32650	-	-	2e-1	At3g12550	XH/XS domain-containing protein / XS zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.203623.1.S1_at	At2g32650	NBS resistance protein	-	6e-1	At2g19530	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	Ptp.7909.2.A1_at	At2g32650	-	-	5e+0	At5g63065	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	PtpAffx.30964.2.A1_at	At2g32650	hypothetical protein	-	5e+0	At5g48335	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.3203.4.A1_at	At2g32650	hypothetical protein	-	7e-59	At4g24190	SHD (SHEPHERD)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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