CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.19099.1.S1_at

Gene name
Homology with Arabidopsis Similar to At2g32650: - (HF=4e+0)

Module size 6 genes

NF 0.13

%ile 8.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 85.8 0.93 Zm.19099.1.S1_at CO530975 - - 4e+0 At2g32650 - O.I. H.G. S.X.
0.60 77.8 0.93 Zm.7559.1.A1_at AY110410.1 - - 6e-3 At5g48370 thioesterase family protein O.I. H.G. S.X.
0.26 22.7 0.93 ZmAffx.1110.1.A1_at AW225256 - - 8e-1 At5g06250 transcription factor O.I. H.G. S.X.
0.17 10.6 0.94 Zm.1228.2.A1_at AI795581 Hypothetical protein LOC100191844 - 1e-34 At5g10840 endomembrane protein 70, putative O.I. H.G. S.X.
0.08 3.4 0.93 Zm.15418.1.A1_at AY109016.1 Hypothetical protein LOC100191383 - 1e+1 At5g43570 serine-type endopeptidase inhibitor O.I. H.G. S.X.
0.05 1.9 0.93 ZmAffx.189.2.A1_a_at AI668397 hypothetical protein LOC100278348 - 8e-1 At1g70510 KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	85.8	0.93	Zm.19099.1.S1_at	CO530975	-	-	4e+0	At2g32650	-	O.I.	H.G.	S.X.
0.60	77.8	0.93	Zm.7559.1.A1_at	AY110410.1	-	-	6e-3	At5g48370	thioesterase family protein	O.I.	H.G.	S.X.
0.26	22.7	0.93	ZmAffx.1110.1.A1_at	AW225256	-	-	8e-1	At5g06250	transcription factor	O.I.	H.G.	S.X.
0.17	10.6	0.94	Zm.1228.2.A1_at	AI795581	Hypothetical protein LOC100191844	-	1e-34	At5g10840	endomembrane protein 70, putative	O.I.	H.G.	S.X.
0.08	3.4	0.93	Zm.15418.1.A1_at	AY109016.1	Hypothetical protein LOC100191383	-	1e+1	At5g43570	serine-type endopeptidase inhibitor	O.I.	H.G.	S.X.
0.05	1.9	0.93	ZmAffx.189.2.A1_a_at	AI668397	hypothetical protein LOC100278348	-	8e-1	At1g70510	KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.0 98.9 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3 98.8 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6 98.7 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2 98.6 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7 98.6 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3 98.5 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7 98.5 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2 98.4 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7 98.3 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3 96.9 GSM320444 protocol: mRNA - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
15.0	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the rice gene, Os08g0551200, orthologous to the query gene, Zm.19099.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.96 99.7 Os08g0551200 At2g32650 - Protein of unknown function DUF630 domaincontaining protein 4e-1 At5g47220 ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2) O.I. H.G. S.X.
0.47 62.3 Os06g0233600 At2g32650 - Hypothetical protein 1e+1 At3g10490 anac052 (Arabidopsis NAC domain containing protein 52) O.I. H.G. S.X.
0.47 62.3 Os04g0471000 At2g32650 - - 7e-2 At5g43170 AZF3 (ARABIDOPSIS ZINC-FINGER PROTEIN 3) O.I. H.G. S.X.
0.45 58.8 Os10g0406000 At2g32650 - - 2e-2 At2g44840 ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) O.I. H.G. S.X.
0.45 58.8 Os04g0454801 At2g32650 - - 3e-1 At1g11260 STP1 (SUGAR TRANSPORTER 1) O.I. H.G. S.X.
0.44 58.1 Os03g0636700 At2g32650 - IQ calmodulin-binding region domain containingprotein 2e-1 At4g33660 unknown protein O.I. H.G. S.X.
0.43 55.4 Os03g0597400 At2g32650 - Conserved hypothetical protein 5e-2 At3g04640 glycine-rich protein O.I. H.G. S.X.
0.42 53.9 Os12g0168650 At2g32650 - - 3e-2 At3g61870 unknown protein O.I. H.G. S.X.
0.40 51.1 Os03g0652300 At2g32650 - - 3e-1 At3g50330 HEC2 (HECATE 2) O.I. H.G. S.X.
0.40 51.1 Os04g0290500 At2g32650 - - 3e-1 At3g55880 unknown protein O.I. H.G. S.X.
0.39 48.3 Os02g0738300 At2g32650 - Conserved hypothetical protein 1e-1 At4g14695 unknown protein O.I. H.G. S.X.
0.39 48.3 Os01g0223150 At2g32650 - - 4e-1 At2g27130 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.39 48.3 Os08g0404800 At2g32650 - - 3e+0 At4g24026 unknown protein O.I. H.G. S.X.
0.38 46.9 Os10g0517800 At2g32650 - Hypothetical protein 3e+0 At5g58260 - O.I. H.G. S.X.
0.37 45.0 Os01g0213200 At2g32650 - - 4e-1 At1g47970 unknown protein O.I. H.G. S.X.
0.37 45.0 Os02g0781200 At2g32650 - - 2e+0 At5g64120 peroxidase, putative O.I. H.G. S.X.
0.35 41.7 Os11g0652900 At2g32650 - Tropinone reductase II 6e-3 At1g07440 tropinone reductase, putative / tropine dehydrogenase, putative O.I. H.G. S.X.
0.34 40.0 Os06g0645600 At2g32650 - Conserved hypothetical protein 3e+0 At1g56530 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.33 38.8 Os01g0166200 At2g32650 - - 2e+0 At4g16240 unknown protein O.I. H.G. S.X.
0.32 36.3 Os03g0332366 At2g32650 - - 2e-1 At5g04080 unknown protein O.I. H.G. S.X.
0.32 36.3 Os10g0411100 At2g32650 - Conserved hypothetical protein 8e-2 At2g35430 zinc finger (CCCH-type) family protein O.I. H.G. S.X.
0.32 36.3 Os11g0224500 At2g32650 - - 2e+0 At3g54560 HTA11 O.I. H.G. S.X.
0.32 36.3 Os05g0149200 At2g32650 - PWWP domain containing protein 4e-1 At1g16510 auxin-responsive family protein O.I. H.G. S.X.
0.32 36.3 Os01g0551600 At2g32650 - - 1e-2 At5g57510 unknown protein O.I. H.G. S.X.
0.32 36.3 Os02g0300800 At2g32650 - - 2e+1 At5g28642 unknown protein O.I. H.G. S.X.
0.32 36.3 Os09g0484700 At2g32650 - - 1e+0 At5g16950 unknown protein O.I. H.G. S.X.
0.31 34.5 Os02g0217900 At2g32650 - 17.9 kDa class II heat shock protein 3e-1 At5g12020 HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN) O.I. H.G. S.X.
0.29 31.1 Os06g0233100 At2g32650 - - 3e+0 At5g65000 nucleotide-sugar transporter family protein O.I. H.G. S.X.
0.28 31.1 Os04g0467300 At2g32650 - - 2e-1 At2g22000 PROPEP6 (Elicitor peptide 6 precursor) O.I. H.G. S.X.
0.26 25.6 Os09g0463400 At2g32650 - - 2e+0 At3g56500 serine-rich protein-related O.I. H.G. S.X.
0.25 24.1 Os06g0277500 At2g32650 - - 6e-3 At3g59060 PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6) O.I. H.G. S.X.
0.24 22.4 Os12g0614500 At2g32650 - - 6e-1 At3g62630 - O.I. H.G. S.X.
0.24 22.4 Os01g0609800 At2g32650 - - 2e-2 At1g58150 unknown protein O.I. H.G. S.X.
0.24 22.4 Os04g0464300 At2g32650 - Conserved hypothetical protein 3e-2 At5g36710 unknown protein O.I. H.G. S.X.
0.24 22.4 Os04g0432100 At2g32650 - GRAS transcription factor domain containingprotein 8e-1 At5g65495 unknown protein O.I. H.G. S.X.
0.23 21.2 Os09g0496000 At2g32650 - - 2e-1 At3g06000 leucine-rich repeat family protein O.I. H.G. S.X.
0.23 21.2 Os10g0328900 At2g32650 - - 1e-2 At3g05490 RALFL22 (ralf-like 22) O.I. H.G. S.X.
0.20 16.5 Os10g0345500 At2g32650 - - 1e+0 At5g14740 CA2 (CARBONIC ANHYDRASE 2) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.96	99.7	Os08g0551200	At2g32650	-	Protein of unknown function DUF630 domaincontaining protein	4e-1	At5g47220	ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)	O.I.	H.G.	S.X.
0.47	62.3	Os06g0233600	At2g32650	-	Hypothetical protein	1e+1	At3g10490	anac052 (Arabidopsis NAC domain containing protein 52)	O.I.	H.G.	S.X.
0.47	62.3	Os04g0471000	At2g32650	-	-	7e-2	At5g43170	AZF3 (ARABIDOPSIS ZINC-FINGER PROTEIN 3)	O.I.	H.G.	S.X.
0.45	58.8	Os10g0406000	At2g32650	-	-	2e-2	At2g44840	ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)	O.I.	H.G.	S.X.
0.45	58.8	Os04g0454801	At2g32650	-	-	3e-1	At1g11260	STP1 (SUGAR TRANSPORTER 1)	O.I.	H.G.	S.X.
0.44	58.1	Os03g0636700	At2g32650	-	IQ calmodulin-binding region domain containingprotein	2e-1	At4g33660	unknown protein	O.I.	H.G.	S.X.
0.43	55.4	Os03g0597400	At2g32650	-	Conserved hypothetical protein	5e-2	At3g04640	glycine-rich protein	O.I.	H.G.	S.X.
0.42	53.9	Os12g0168650	At2g32650	-	-	3e-2	At3g61870	unknown protein	O.I.	H.G.	S.X.
0.40	51.1	Os03g0652300	At2g32650	-	-	3e-1	At3g50330	HEC2 (HECATE 2)	O.I.	H.G.	S.X.
0.40	51.1	Os04g0290500	At2g32650	-	-	3e-1	At3g55880	unknown protein	O.I.	H.G.	S.X.
0.39	48.3	Os02g0738300	At2g32650	-	Conserved hypothetical protein	1e-1	At4g14695	unknown protein	O.I.	H.G.	S.X.
0.39	48.3	Os01g0223150	At2g32650	-	-	4e-1	At2g27130	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.39	48.3	Os08g0404800	At2g32650	-	-	3e+0	At4g24026	unknown protein	O.I.	H.G.	S.X.
0.38	46.9	Os10g0517800	At2g32650	-	Hypothetical protein	3e+0	At5g58260	-	O.I.	H.G.	S.X.
0.37	45.0	Os01g0213200	At2g32650	-	-	4e-1	At1g47970	unknown protein	O.I.	H.G.	S.X.
0.37	45.0	Os02g0781200	At2g32650	-	-	2e+0	At5g64120	peroxidase, putative	O.I.	H.G.	S.X.
0.35	41.7	Os11g0652900	At2g32650	-	Tropinone reductase II	6e-3	At1g07440	tropinone reductase, putative / tropine dehydrogenase, putative	O.I.	H.G.	S.X.
0.34	40.0	Os06g0645600	At2g32650	-	Conserved hypothetical protein	3e+0	At1g56530	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.33	38.8	Os01g0166200	At2g32650	-	-	2e+0	At4g16240	unknown protein	O.I.	H.G.	S.X.
0.32	36.3	Os03g0332366	At2g32650	-	-	2e-1	At5g04080	unknown protein	O.I.	H.G.	S.X.
0.32	36.3	Os10g0411100	At2g32650	-	Conserved hypothetical protein	8e-2	At2g35430	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.
0.32	36.3	Os11g0224500	At2g32650	-	-	2e+0	At3g54560	HTA11	O.I.	H.G.	S.X.
0.32	36.3	Os05g0149200	At2g32650	-	PWWP domain containing protein	4e-1	At1g16510	auxin-responsive family protein	O.I.	H.G.	S.X.
0.32	36.3	Os01g0551600	At2g32650	-	-	1e-2	At5g57510	unknown protein	O.I.	H.G.	S.X.
0.32	36.3	Os02g0300800	At2g32650	-	-	2e+1	At5g28642	unknown protein	O.I.	H.G.	S.X.
0.32	36.3	Os09g0484700	At2g32650	-	-	1e+0	At5g16950	unknown protein	O.I.	H.G.	S.X.
0.31	34.5	Os02g0217900	At2g32650	-	17.9 kDa class II heat shock protein	3e-1	At5g12020	HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN)	O.I.	H.G.	S.X.
0.29	31.1	Os06g0233100	At2g32650	-	-	3e+0	At5g65000	nucleotide-sugar transporter family protein	O.I.	H.G.	S.X.
0.28	31.1	Os04g0467300	At2g32650	-	-	2e-1	At2g22000	PROPEP6 (Elicitor peptide 6 precursor)	O.I.	H.G.	S.X.
0.26	25.6	Os09g0463400	At2g32650	-	-	2e+0	At3g56500	serine-rich protein-related	O.I.	H.G.	S.X.
0.25	24.1	Os06g0277500	At2g32650	-	-	6e-3	At3g59060	PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)	O.I.	H.G.	S.X.
0.24	22.4	Os12g0614500	At2g32650	-	-	6e-1	At3g62630	-	O.I.	H.G.	S.X.
0.24	22.4	Os01g0609800	At2g32650	-	-	2e-2	At1g58150	unknown protein	O.I.	H.G.	S.X.
0.24	22.4	Os04g0464300	At2g32650	-	Conserved hypothetical protein	3e-2	At5g36710	unknown protein	O.I.	H.G.	S.X.
0.24	22.4	Os04g0432100	At2g32650	-	GRAS transcription factor domain containingprotein	8e-1	At5g65495	unknown protein	O.I.	H.G.	S.X.
0.23	21.2	Os09g0496000	At2g32650	-	-	2e-1	At3g06000	leucine-rich repeat family protein	O.I.	H.G.	S.X.
0.23	21.2	Os10g0328900	At2g32650	-	-	1e-2	At3g05490	RALFL22 (ralf-like 22)	O.I.	H.G.	S.X.
0.20	16.5	Os10g0345500	At2g32650	-	-	1e+0	At5g14740	CA2 (CARBONIC ANHYDRASE 2)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

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Gene ID	Zm.19099.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g32650: - (HF=4e+0)
Module size	6 genes
NF	0.13
%ile	8.5

Co-expression analysis

Gene ID Zm.19099.1.S1_at Gene name Homology with ArabidopsisSimilar to At2g32650: - (HF=4e+0) Module size 6 genes NF 0.13 %ile 8.5

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Zm.19099.1.S1_at

Gene name
Homology with Arabidopsis Similar to At2g32650: - (HF=4e+0)

Module size 6 genes

NF 0.13

%ile 8.5

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera