| VF | %ile | CC | Gene ID | Repr. ID | Gene name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|
0.61 | 79.5 | 0.97 | Zm.9878.1.A1_at | BM347591 | hypothetical protein LOC100191208 | - | 5e+0 | At3g17910 | SURF1 (SURFEIT 1) | O.I. | H.G. | S.X. | | 0.50 | 65.7 | 0.97 | Zm.5717.1.A1_at | AY108572.1 | malate dehydrogenase, glyoxysomal | - | 9e-49 | At5g09660 | PMDH2 (peroxisomal NAD-malate dehydrogenase 2) | O.I. | H.G. | S.X. | | 0.50 | 65.7 | 0.97 | Zm.4767.2.S1_at | CA830816 | glutamyl-tRNA synthetase, cytoplasmic | - | 2e-5 | At5g26710 | glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putative | O.I. | H.G. | S.X. | | 0.46 | 58.4 | 0.96 | Zm.1043.1.S1_at | BM266900 | - | - | 6e-23 | At5g15920 | structural maintenance of chromosomes (SMC) family protein (MSS2) | O.I. | H.G. | S.X. | | 0.44 | 55.7 | 0.97 | Zm.14069.1.S1_a_at | AI734511 | hypothetical protein LOC100274401 | - | 2e-7 | At1g49600 | ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a) | O.I. | H.G. | S.X. | | 0.44 | 55.7 | 0.97 | Zm.5778.1.A1_at | BG873747 | hypothetical protein LOC100275690 | - | 1e-1 | At5g11680 | unknown protein | O.I. | H.G. | S.X. | | 0.43 | 52.8 | 0.98 | Zm.1706.1.A1_at | BF728433 | hypothetical protein LOC100276850 | - | 1e+0 | At5g47870 | unknown protein | O.I. | H.G. | S.X. | | 0.40 | 48.5 | 0.97 | Zm.5545.1.A1_at | AI691787 | - | - | 5e+0 | At4g23720 | unknown protein | O.I. | H.G. | S.X. | | 0.38 | 44.2 | 0.97 | Zm.2895.8.S1_a_at | AI677411 | - | - | 8e-41 | At4g14320 | 60S ribosomal protein L36a/L44 (RPL36aB) | O.I. | H.G. | S.X. | | 0.38 | 44.2 | 0.98 | Zm.5715.1.A2_at | BI542710 | O-methyltransferase ZRP4 | - | 3e+0 | At5g25752 | RBL11 (RHOMBOID-LIKE PROTEIN 11) | O.I. | H.G. | S.X. | | 0.36 | 41.3 | 0.97 | Zm.2813.1.A1_at | BM381379 | - | - | 1e+0 | At4g02360 | unknown protein | O.I. | H.G. | S.X. | | 0.36 | 41.3 | 0.97 | Zm.3837.1.S1_at | AI978033 | epoxide hydrolase 2 | - | 5e-2 | At2g26750 | epoxide hydrolase, putative | O.I. | H.G. | S.X. | | 0.36 | 41.3 | 0.98 | Zm.14013.1.A1_a_at | BM075523 | hypothetical protein LOC100193147 /// hypothetical protein LOC100275870 /// hypothetical protein LOC100276632 /// hypothetical protein LOC100278726 | - | 2e+1 | At5g51860 | MADS-box protein (AGL72) | O.I. | H.G. | S.X. | | 0.36 | 41.3 | 0.98 | Zm.14433.1.S1_at | CA401946 | hypothetical protein LOC100192707 | - | 2e+0 | At5g02310 | PRT6 (PROTEOLYSIS 6) | O.I. | H.G. | S.X. | | 0.35 | 38.9 | 0.97 | Zm.3838.1.A1_at | CF063291 | - | - | 7e-4 | At4g32272 | - | O.I. | H.G. | S.X. | | 0.33 | 36.0 | 0.96 | Zm.7076.1.S1_at | BM334411 | - | - | 6e-19 | At3g21700 | SGP2 | O.I. | H.G. | S.X. | | 0.33 | 36.0 | 0.96 | Zm.14692.1.A1_at | BQ539260 | - | - | 5e+0 | At1g09195 | - | O.I. | H.G. | S.X. | | 0.33 | 36.0 | 0.97 | Zm.1633.1.S1_at | CF636961 | fiber protein Fb34 | - | 5e-7 | At1g13380 | unknown protein | O.I. | H.G. | S.X. | | 0.33 | 36.0 | 0.97 | Zm.6353.1.S1_a_at | CA399677 | heat shock protein STI | - | 2e-14 | At1g62740 | stress-inducible protein, putative | O.I. | H.G. | S.X. | | 0.33 | 36.0 | 0.97 | Zm.6931.1.S1_a_at | AY588275.1 | hypothetical LOC542168 | - | 2e-4 | At2g36310 | URH1 (URIDINE-RIBOHYDROLASE 1) | O.I. | H.G. | S.X. | | 0.33 | 36.0 | 0.97 | Zm.3478.1.S1_a_at | AY124703.1 | sucrose synthase2 | - | 4e-47 | At5g49190 | SUS2 (SUCROSE SYNTHASE 2) | O.I. | H.G. | S.X. | | 0.33 | 36.0 | 0.97 | Zm.2912.1.A1_at | CF244896 | hypothetical protein LOC100272765 | - | 1e-82 | At1g10430 | PP2A-2 | O.I. | H.G. | S.X. | | 0.33 | 36.0 | 0.97 | Zm.3900.2.A1_at | BM267197 | hypothetical protein LOC100191188 | - | 1e-17 | At3g59580 | RWP-RK domain-containing protein | O.I. | H.G. | S.X. | | 0.32 | 33.4 | 0.95 | Zm.3314.2.A1_at | CF631651 | DNA binding activity2 | - | 6e-7 | At4g11150 | TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) | O.I. | H.G. | S.X. | | 0.31 | 31.6 | 0.96 | Zm.13103.1.S1_at | CO534624 | hypothetical protein LOC100191205 | - | 2e-4 | At5g49710 | unknown protein | O.I. | H.G. | S.X. | | 0.31 | 31.6 | 0.96 | Zm.12000.1.A1_at | BM382537 | - | - | 1e+1 | At5g35680 | eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative | O.I. | H.G. | S.X. | | 0.31 | 31.6 | 0.96 | Zm.12716.1.A1_at | AY112283.1 | - | - | 4e-1 | At3g43583 | unknown protein | O.I. | H.G. | S.X. | | 0.31 | 31.6 | 0.97 | Zm.6974.1.A1_at | BM078279 | hypothetical protein LOC100276561 | - | 8e-1 | At5g57887 | unknown protein | O.I. | H.G. | S.X. | | 0.31 | 31.6 | 0.98 | Zm.5474.1.S1_at | CO531804 | hypothetical protein LOC100194401 | - | 2e-3 | At4g11450 | unknown protein | O.I. | H.G. | S.X. | | 0.30 | 29.8 | 0.97 | ZmAffx.1007.1.A1_at | AI881371 | - | - | 1e+1 | At2g34570 | MEE21 (maternal effect embryo arrest 21) | O.I. | H.G. | S.X. | | 0.30 | 29.8 | 0.97 | Zm.9023.1.A1_at | AY109177.1 | - | - | 4e-14 | At4g02480 | AAA-type ATPase family protein | O.I. | H.G. | S.X. | | 0.30 | 29.8 | 0.95 | Zm.3591.1.A1_at | AW000408 | hypothetical protein LOC100279870 | - | 1e-30 | At5g12040 | carbon-nitrogen hydrolase family protein | O.I. | H.G. | S.X. | | 0.30 | 29.8 | 0.97 | Zm.5938.2.A1_a_at | AI665871 | - | - | 8e-1 | At4g08390 | SAPX (STROMAL ASCORBATE PEROXIDASE) | O.I. | H.G. | S.X. | | 0.29 | 28.1 | 0.95 | Zm.17325.1.A1_at | CF627917 | - | - | 2e-51 | At3g01090 | AKIN10 (Arabidopsis SNF1 kinase homolog 10) | O.I. | H.G. | S.X. | | 0.29 | 28.1 | 0.97 | Zm.17598.1.S1_at | CK370536 | - | - | 6e-1 | At3g26740 | CCL (CCR-LIKE) | O.I. | H.G. | S.X. | | 0.29 | 28.1 | 0.97 | Zm.4182.1.S1_at | CF631780 | hypothetical protein LOC100276027 | - | 1e-4 | At5g54855 | pollen Ole e 1 allergen and extensin family protein | O.I. | H.G. | S.X. | | 0.27 | 24.6 | 0.96 | Zm.4316.1.S1_a_at | AI881448 | hypothetical protein LOC100273812 /// cleavage and polyadenylation specificity factor 5 | - | 1e-39 | At4g25550 | protein binding | O.I. | H.G. | S.X. | | 0.27 | 24.6 | 0.93 | Zm.4664.2.A1_at | AI737871 | - | - | 5e-3 | At2g26640 | KCS11 (3-KETOACYL-COA SYNTHASE 11) | O.I. | H.G. | S.X. | | 0.27 | 24.6 | 0.96 | Zm.5789.3.S1_at | X83696.1 | gamma-tubulin 1 | - | 4e-120 | At5g05620 | GCP2 (GAMMA-TUBULIN COMPLEX PROTEIN 2) | O.I. | H.G. | S.X. | | 0.27 | 24.6 | 0.97 | Zm.2603.2.S1_at | AY111467.1 | - | - | 3e-2 | At5g02540 | short-chain dehydrogenase/reductase (SDR) family protein | O.I. | H.G. | S.X. | | 0.27 | 24.6 | 0.97 | Zm.2604.1.S1_at | AW066424 | - | - | 3e-1 | At1g75680 | AtGH9B7 (Arabidopsis thaliana glycosyl hydrolase 9B7) | O.I. | H.G. | S.X. | | 0.26 | 22.7 | 0.97 | Zm.5977.1.A1_at | BM349445 | hypothetical protein LOC100277569 | - | 1e-1 | At1g74530 | unknown protein | O.I. | H.G. | S.X. | | 0.25 | 21.3 | 0.96 | Zm.13857.1.S1_s_at | AF439726.1 | methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase /// methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase isoform 1 | - | 3e-13 | At3g12290 | tetrahydrofolate dehydrogenase/cyclohydrolase, putative | O.I. | H.G. | S.X. | | 0.25 | 21.3 | 0.97 | Zm.14825.1.S1_at | AJ430639.1 | m25 protein | - | 5e-1 | At4g09960 | STK (SEEDSTICK) | O.I. | H.G. | S.X. | | 0.25 | 21.3 | 0.97 | Zm.4138.2.A1_at | AI881954 | - | - | 3e+0 | At1g09250 | transcription factor | O.I. | H.G. | S.X. | | 0.25 | 21.3 | 0.97 | Zm.10280.1.S1_at | CO529528 | hypothetical protein LOC100216803 | - | 5e-2 | At4g13010 | oxidoreductase, zinc-binding dehydrogenase family protein | O.I. | H.G. | S.X. | | 0.25 | 21.3 | 0.97 | Zm.13865.1.S1_at | AF521880.1 | R2R3 Myb transcription factor MYB-IF35 | - | 1e-5 | At5g61420 | MYB28 (myb domain protein 28) | O.I. | H.G. | S.X. | | 0.25 | 21.3 | 0.98 | Zm.1881.1.S1_at | CF011561 | - | - | 5e-1 | At3g17590 | BSH (BUSHY GROWTH) | O.I. | H.G. | S.X. | |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
| 8.0 | 98.0 | GSM320453 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes |  |
| 7.9 | 97.9 | GSM320455 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 7.9 | 97.9 | GSM320450 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 7.9 | 97.9 | GSM320451 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 7.6 | 97.9 | GSM320448 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 7.6 | 97.9 | GSM320449 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 7.4 | 97.8 | GSM320454 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 6.8 | 97.6 | GSM320447 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 6.6 | 97.6 | GSM320452 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 3.3 | 94.7 | GSM202310 | B73 19 day after pollination embryo tissue, biological replicate 1 | GSE8179 | Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data | |
