Co-expression analysis

Gene ID	Zm.19094.1.S1_at
Gene name	hypothetical protein LOC100279575
Homology with Arabidopsis	Similar to At1g14540: anionic peroxidase, putative (HF=2e-4)
Module size	6 genes
NF	0.47
%ile	57.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.19094.1.S1_at	CO522607	hypothetical protein LOC100279575	-	2e-4	At1g14540	anionic peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.98	Zm.12713.1.S1_at	BI478939	-	-	1e-24	At3g19170	ATPREP1 (PRESEQUENCE PROTEASE 1)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.13794.1.S1_at	AY104961.1	-	-	7e-1	At5g53280	PDV1 (PLASTID DIVISION1)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.2031.1.A1_at	AY103664.1	csu1120 protein	-	5e-4	At3g50550	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.4034.1.A1_at	CF972567	-	-	3e-7	At1g55680	WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.1377.1.A1_at	BG873710	hypothetical protein LOC100275345	-	2e+0	At2g46460	nucleic acid binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.0	98.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.20027.1.S1_at, orthologous to the query gene, Zm.19094.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	PtpAffx.20027.1.S1_at	At1g14540	-	-	6e-6	At1g73000	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.4965.1.A1_at	At1g14540	-	-	2e-4	At4g35790	ATPLDDELTA	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	PtpAffx.24508.3.S1_a_at	At1g14540	hypothetical protein	-	2e-56	At5g20070	ATNUDX19 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	PtpAffx.37524.2.S1_a_at	At1g14540	hypothetical protein	-	2e+0	At4g31940	CYP82C4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.63997.1.S1_at	At1g14540	hypothetical protein	-	5e-13	At3g06550	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	Ptp.3207.1.S1_at	At1g14540	hypothetical protein	-	7e-13	At2g35680	dual specificity protein phosphatase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	Ptp.1349.1.A1_at	At1g14540	hypothetical protein	-	2e-6	At4g10160	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	Ptp.2929.1.S1_at	At1g14540	hypothetical protein	-	8e+0	At5g44580	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	Ptp.2232.1.S1_at	At1g14540	-	-	5e+0	At4g11040	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.78779.1.S1_at	At1g14540	-	-	8e-2	At5g43410	ethylene-responsive factor, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.66816.1.S1_at	At1g14540	hypothetical protein	-	3e-11	At5g63060	transporter	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.137815.1.S1_at	At1g14540	hypothetical protein	-	8e-6	At5g40270	metal-dependent phosphohydrolase HD domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	Ptp.3991.1.S1_at	At1g14540	-	-	7e-81	At5g19050	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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