CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.19094.1.S1_at

Gene name hypothetical protein LOC100279575
Homology with Arabidopsis Similar to At1g14540: anionic peroxidase, putative (HF=2e-4)

Module size 6 genes

NF 0.47

%ile 57.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.98 Zm.19094.1.S1_at CO522607 hypothetical protein LOC100279575 - 2e-4 At1g14540 anionic peroxidase, putative O.I. H.G. S.X.
0.57 75.1 0.98 Zm.12713.1.S1_at BI478939 - - 1e-24 At3g19170 ATPREP1 (PRESEQUENCE PROTEASE 1) O.I. H.G. S.X.
0.44 55.7 0.98 Zm.13794.1.S1_at AY104961.1 - - 7e-1 At5g53280 PDV1 (PLASTID DIVISION1) O.I. H.G. S.X.
0.40 48.5 0.98 Zm.2031.1.A1_at AY103664.1 csu1120 protein - 5e-4 At3g50550 unknown protein O.I. H.G. S.X.
0.33 36.0 0.97 Zm.4034.1.A1_at CF972567 - - 3e-7 At1g55680 WD-40 repeat family protein O.I. H.G. S.X.
0.29 28.1 0.97 Zm.1377.1.A1_at BG873710 hypothetical protein LOC100275345 - 2e+0 At2g46460 nucleic acid binding O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.0 98.0 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9 97.9 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9 97.9 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9 97.9 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6 97.9 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6 97.9 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4 97.8 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8 97.6 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6 97.6 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3 94.7 GSM202310 B73 19 day after pollination embryo tissue, biological replicate 1 GSE8179 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g14540, orthologous to the query gene, Zm.19094.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At1g14540 838016 anionic peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. H.G. S.X.
1.00 100.0 At2g37430 818319 zinc finger (C2H2 type) family protein (ZAT11) F:transcription factor activity, zinc ion binding, nucleic acid binding;P:response to chitin, regulation of transcription;C:intracellular;MPOF O.I. H.G. S.X.
1.00 100.0 At5g24110 832476 WRKY30 member of WRKY Transcription Factor; Group III O.I. H.G. S.X.
0.92 96.0 At1g30370 839917 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:unknown;PBOFMV O.I. H.G. S.X.
0.91 95.6 At1g22810 838887 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. O.I. H.G. S.X.
0.71 84.2 At3g23220 821900 DNA binding / transcription factor encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. O.I. H.G. S.X.
0.63 78.1 At4g28460 828963 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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