Co-expression analysis

Gene ID	Zm.19066.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g02000: GAD3 (glutamate decarboxylase 3) (HF=1e-37)
Module size	8 genes
NF	0.53
%ile	68.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.1	0.97	Zm.19066.1.S1_at	CD975063	-	-	1e-37	At2g02000	GAD3 (glutamate decarboxylase 3)	O.I.	H.G.	S.X.	Please select
0.64	81.7	0.97	Zm.17497.1.A1_at	BG266429	hypothetical protein LOC100273930	-	3e+0	Atmg00140	-	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.97	Zm.2134.1.A1_at	AI734434	-	-	9e-2	At2g41780	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.97	Zm.749.1.S1_at	AY291061.1	photosystem II subunit PsbS1	-	8e-7	At1g44575	NPQ4 (NONPHOTOCHEMICAL QUENCHING)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.98	Zm.6049.3.A1_a_at	AI734480	phosphatidylinositol transporter/ transporter	-	3e-3	At1g76640	calmodulin-related protein, putative	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.98	Zm.18446.1.A1_at	CO518758	-	-	3e-2	At1g29800	phosphoinositide binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.97	Zm.13681.1.S1_at	AY106895.1	hypothetical protein LOC100191679	-	4e-10	At1g12370	PHR1 (PHOTOLYASE 1)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.98	Zm.6146.1.A1_at	CD989568	brassinosteroid biosynthesis-like protein	-	1e-40	At3g19820	DWF1 (DWARF 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.1	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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