Co-expression analysis

Gene ID	Zm.19061.1.A1_at
Gene name	hypothetical protein LOC100193436
Homology with Arabidopsis	Similar to At3g62370: unknown protein (HF=5e+0)
Module size	6 genes
NF	0.43
%ile	49.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	55.7	0.94	Zm.19061.1.A1_at	CO532046	hypothetical protein LOC100193436	-	5e+0	At3g62370	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.95	Zm.15432.1.S1_at	CA401222	-	-	9e+0	At5g02080	DNA/panthothenate metabolism flavoprotein family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.96	Zm.33.1.S1_s_at	M12144.1	alpha zein 19kDa D1 /// alpha zein 19kDa D2 /// hypothetical protein LOC100101516 /// z1D alpha zein protein /// z1D alpha zein protein /// z1D alpha zein protein /// z1D alpha zein protein /// z1A alpha zein protein	-	7e-1	At1g18265	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.3952.1.S1_at	AW155692	-	-	1e-4	At2g19950	GC1 (Golgin Candidate 1)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.96	Zm.17102.1.A1_at	CD527578	Histone H3.2	-	4e-29	At1g09200	histone H3	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.95	Zm.5323.1.A1_at	CK827563	hypothetical protein LOC100194352	-	2e+0	At4g13968	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.6	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
6.6	97.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.30358.1.S1_at, orthologous to the query gene, Zm.19061.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	83.4	GmaAffx.30358.1.S1_at	At3g62370	-	-	5e-2	At5g47170	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	GmaAffx.73357.1.S1_at	At3g62370	-	-	5e-24	At5g08650	GTP-binding protein LepA, putative	O.I.	H.G.	S.X.	Please select
0.63	82.9	GmaAffx.76849.1.S1_at	At3g62370	-	-	2e-9	At5g47780	GAUT4 (Galacturonosyltransferase 4)	O.I.	H.G.	S.X.	Please select
0.50	71.7	GmaAffx.17650.1.S1_at	At3g62370	homogentisate phytyltransferase VTE2-2	-	3e-44	At3g11945	homogentisate farnesyltransferase/ homogentisate geranylgeranyltransferase/ homogentisate solanesyltransferase	O.I.	H.G.	S.X.	Please select
0.44	63.3	Gma.1938.3.S1_at	At3g62370	-	-	1e-10	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.23992.1.S1_at	At3g62370	-	-	4e-58	At5g15450	CLPB3 (CASEIN LYTIC PROTEINASE B3)	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.84017.1.S1_at	At3g62370	-	-	3e-29	At5g13650	elongation factor family protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	Gma.15790.2.S1_at	At3g62370	-	-	4e-25	At5g13410	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.	Please select
0.25	32.6	Gma.15866.2.S1_at	At3g62370	-	-	1e+0	At5g66420	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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