Co-expression analysis

Gene ID	Zm.18992.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g20370: serine-rich protein-related (HF=4e-1)
Module size	6 genes
NF	0.65
%ile	86.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.97	Zm.18992.1.A1_at	CO521210	-	-	4e-1	At5g20370	serine-rich protein-related	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.98	Zm.13427.1.S1_at	AF124738.1	hypothetical protein LOC100194389	-	1e-7	At4g21520	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.97	Zm.5834.1.A1_a_at	BM335098	-	-	6e+0	At4g01260	transcription regulator	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.19306.1.A1_at	AI664819	hypothetical protein LOC100193355	-	6e-1	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.2330.1.S1_at	BE552610	-	-	4e-15	At2g42120	POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.98	Zm.18946.1.A1_at	BM338625	hypothetical protein LOC100278262	-	1e+0	At1g69660	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.1	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, Contig11647_at, orthologous to the query gene, Zm.18992.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	92.8	Contig11647_at	At5g20370	-	-	4e-11	At5g57280	methyltransferase	O.I.	H.G.	S.X.	Please select
0.46	61.0	Contig8458_at	At5g20370	-	-	1e-4	At4g25640	MATE efflux family protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	HD04D15u_at	At5g20370	-	-	9e-1	At5g24593	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	Contig7018_at	At5g20370	-	-	1e+0	At3g60760	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig16879_at	At5g20370	-	-	2e-3	At5g16660	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	HA11I24u_s_at	At5g20370	-	-	2e+0	At4g27380	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig13569_at	At5g20370	-	-	3e+0	At5g56452	-	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig23342_at	At5g20370	-	-	4e+0	At5g48605	-	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig8562_at	At5g20370	-	-	2e-13	At3g15060	AtRABA1g (Arabidopsis Rab GTPase homolog A1g)	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig6642_at	At5g20370	-	-	3e-77	At5g46290	KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I)	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig4371_at	At5g20370	-	-	2e-9	At1g63290	ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig6533_at	At5g20370	-	-	5e-6	At2g46790	APRR9 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9)	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig12013_s_at	At5g20370	-	-	3e+0	At5g38080	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig22348_at	At5g20370	-	-	1e+1	At5g52250	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig4725_at	At5g20370	-	-	2e-1	At4g39820	binding	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig4470_s_at	At5g20370	-	-	3e-1	At1g12240	ATBETAFRUCT4	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig16958_at	At5g20370	-	-	2e+0	At5g46020	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig16354_at	At5g20370	-	-	2e+0	At3g09700	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig12098_at	At5g20370	-	-	2e-6	At1g16210	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig8050_at	At5g20370	-	-	6e-5	At3g43790	ZIFL2 (ZINC INDUCED FACILITATOR-like 2)	O.I.	H.G.	S.X.	Please select
0.18	18.2	HV05C17u_at	At5g20370	-	-	3e-1	At1g65820	microsomal glutathione s-transferase, putative	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig5629_at	At5g20370	-	-	1e-3	At3g01940	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	HVSMEb0014K23r2_x_at	At5g20370	-	-	3e+0	At2g05410	ubiquitin-specific protease-related / meprin and TRAF homology (MATH) domain-containing protein-related	O.I.	H.G.	S.X.	Please select
0.13	11.6	Contig16514_at	At5g20370	-	-	1e+0	At2g01590	CRR3 (CHLORORESPIRATORY REDUCTION 3)	O.I.	H.G.	S.X.	Please select
0.12	10.4	HVSMEa0005L24r2_s_at	At5g20370	-	-	5e-1	At3g27590	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	Contig11057_at	At5g20370	-	-	1e+0	At3g18870	mitochondrial transcription termination factor-related / mTERF-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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