CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.18992.1.A1_at

Gene name
Homology with Arabidopsis Similar to At5g20370: serine-rich protein-related (HF=4e-1)

Module size 6 genes

NF 0.65

%ile 86.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 85.8 0.97 Zm.18992.1.A1_at CO521210 - - 4e-1 At5g20370 serine-rich protein-related O.I. H.G. S.X.
0.80 94.0 0.98 Zm.13427.1.S1_at AF124738.1 hypothetical protein LOC100194389 - 1e-7 At4g21520 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.77 92.1 0.97 Zm.5834.1.A1_a_at BM335098 - - 6e+0 At4g01260 transcription regulator O.I. H.G. S.X.
0.55 71.6 0.98 Zm.19306.1.A1_at AI664819 hypothetical protein LOC100193355 - 6e-1 At4g13720 inosine triphosphate pyrophosphatase, putative / HAM1 family protein O.I. H.G. S.X.
0.50 65.7 0.98 Zm.2330.1.S1_at BE552610 - - 4e-15 At2g42120 POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) O.I. H.G. S.X.
0.31 31.6 0.98 Zm.18946.1.A1_at BM338625 hypothetical protein LOC100278262 - 1e+0 At1g69660 meprin and TRAF homology domain-containing protein / MATH domain-containing protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.1 98.6 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3 98.5 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2 98.5 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1 98.5 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9 98.5 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4 98.4 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2 98.4 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4 98.3 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8 97.9 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6 97.1 GSM320472 protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g20370, orthologous to the query gene, Zm.18992.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At5g20370 832159 serine-rich protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
1.00 100.0 At1g33220 840216 beta-1,3-glucanase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PO O.I. H.G. S.X.
0.92 96.0 At2g12050 3768039 - F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.92 96.0 At3g56530 824820 anac064 (Arabidopsis NAC domain containing protein 64) F:transcription factor activity;P:regulation of transcription;C:unknown;P O.I. H.G. S.X.
0.92 96.0 At3g59790 825148 ATMPK10 member of MAP Kinase O.I. H.G. S.X.
0.92 96.0 At5g07700 830663 MYB76 (myb domain protein 76) Encodes a putative transcription factor (MYB76). O.I. H.G. S.X.
0.67 81.6 At1g67210 843041 proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFV O.I. H.G. S.X.
0.55 70.6 At5g66300 836762 NAC105 (NAC DOMAIN CONTAINING PROTEIN 105) Encodes a NAC-domain transcription factor. Expressed in the vascular tissue. O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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