Co-expression analysis

Gene ID Zm.18903.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At5g07400: forkhead-associated domain-containing protein / FHA domain-containing protein (HF=7e-2)
Module size 6 genes
NF 0.70
%ile 91.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.98Zm.18903.1.A1_atCO530915--7e-2At5g07400forkhead-associated domain-containing protein / FHA domain-containing proteinO.I.H.G.S.X.
0.7389.90.98Zm.4099.2.A1_s_atAI770849hypothetical protein LOC100191159-8e-1At2g38870protease inhibitor, putativeO.I.H.G.S.X.
0.6179.50.97Zm.12132.3.S1_a_atAI461523hypothetical protein LOC100192680-4e-50At5g03240UBQ3 (POLYUBIQUITIN 3)O.I.H.G.S.X.
0.6077.80.98Zm.18590.1.A1_atAW562614exostosin-like-1e+0At5g22930unknown proteinO.I.H.G.S.X.
0.6077.80.99ZmAffx.1097.1.S1_atAW120085--1e+1At5g25770unknown proteinO.I.H.G.S.X.
0.3641.30.98Zm.1546.3.A1_x_atCK369824--1e-6At1g15270-O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7792.10.98Zm.6418.1.S1_atAY108322.1hypothetical protein LOC100216693-2e-1At3g44580unknown proteinO.I.H.G.S.X.
0.6785.80.96Zm.17772.1.S1_atCK371641--6e-2At4g28170unknown proteinO.I.H.G.S.X.
0.6785.80.96Zm.18466.1.A1_atCO532706hypothetical protein LOC100279872-2e+0At5g51050mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.6179.50.97Zm.11907.1.S1_atCK370738hypothetical protein LOC100194010-2e-15At3g24090glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminaseO.I.H.G.S.X.
0.5775.10.95Zm.6039.1.A1_atBG837895--9e-65At5g03520ATRAB8CO.I.H.G.S.X.
0.5571.60.94Zm.16769.1.A1_atCF634379Hypothetical protein LOC100191855-5e-5At1g04510transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.5571.60.98Zm.5220.1.S1_atAI614989hypothetical protein LOC100279470-1e+0At5g36120CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),)O.I.H.G.S.X.
0.5571.60.98Zm.5441.1.S1_atCO528962hypothetical protein LOC100274317-3e+0At3g23130SUP (SUPERMAN)O.I.H.G.S.X.
0.5369.10.95Zm.19103.1.A1_atAY104453.1Hypothetical protein LOC100193224-3e+0At4g09490RNase H domain-containing proteinO.I.H.G.S.X.
0.5369.10.97Zm.5388.1.S1_atAW453245hypothetical protein LOC100193632-6e-23At3g09180unknown proteinO.I.H.G.S.X.
0.5369.10.97ZmAffx.1074.1.S1_atAI947680--1e+1At2g42210mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinO.I.H.G.S.X.
0.5065.70.95Zm.6896.1.A1_atAI065526--4e+0At3g04890unknown proteinO.I.H.G.S.X.
0.4861.30.96Zm.54.1.S1_atL25805.1alpha-amylase-3e-3At4g25000AMY1 (ALPHA-AMYLASE-LIKE)O.I.H.G.S.X.
0.4455.70.96Zm.18417.1.A1_atCO528437RNA-binding region-containing protein 1-3e-1At5g64400-O.I.H.G.S.X.
0.4455.70.98Zm.19053.1.S1_atCO523639hypothetical protein LOC100193386-2e+0Atmg01020-O.I.H.G.S.X.
0.4352.80.92Zm.15331.1.S1_atCB350880hypothetical protein LOC100275547-5e-3At5g19540unknown proteinO.I.H.G.S.X.
0.4352.80.94Zm.12712.1.S1_atCA404551--1e+0At3g26400EIF4B1O.I.H.G.S.X.
0.4251.30.95Zm.341.1.A1_atAF013487.1--6e-112At5g5842040S ribosomal protein S4 (RPS4D)O.I.H.G.S.X.
0.4048.50.97Zm.246.1.A1_atBM418437glutathione transferase7-7e+0At5g18180Gar1 RNA-binding region family proteinO.I.H.G.S.X.
0.4048.50.98ZmAffx.240.1.S1_atAI670252--3e+0At5g11610exostosin family proteinO.I.H.G.S.X.
0.4048.50.98Zm.16482.2.A1_atBM337760--9e-19At3g0963060S ribosomal protein L4/L1 (RPL4A)O.I.H.G.S.X.
0.3945.60.92Zm.9431.1.A1_atBM337524--1e+0At5g37200zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3945.60.96Zm.2967.1.A1_atAW119983--1e+0At1g30110ATNUDX25 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 25)O.I.H.G.S.X.
0.3844.20.93Zm.12018.1.A1_atBM382690--2e+0At1g72540protein kinase, putativeO.I.H.G.S.X.
0.3844.20.96ZmAffx.845.1.A1_atAI770615--3e-2At3g50980XERO1 (DEHYDRIN XERO 1)O.I.H.G.S.X.
0.3844.20.97Zm.3484.1.A1_atAW438127hypothetical protein LOC100273241-2e+0At1g67700unknown proteinO.I.H.G.S.X.
0.3641.30.96Zm.13565.2.S1_a_atAI665019--3e+0At3g25240unknown proteinO.I.H.G.S.X.
0.3641.30.96Zm.12899.1.A1_atCO531244--9e-1At3g11750dihydroneopterin aldolase, putativeO.I.H.G.S.X.
0.3641.30.98Zm.4483.1.A1_atCF051385--4e-1At3g27580ATPK7O.I.H.G.S.X.
0.3437.20.94Zm.18434.1.A1_atCF631178hypothetical protein LOC100193586-3e+0At4g19430unknown proteinO.I.H.G.S.X.
0.3336.00.92Zm.1896.1.S1_atAY313902.1yabby15 protein-6e-11At2g45190AFO (ABNORMAL FLORAL ORGANS)O.I.H.G.S.X.
0.3336.00.94Zm.3695.1.A1_atBI674832--1e-5At4g20980eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putativeO.I.H.G.S.X.
0.3336.00.95Zm.14711.1.A1_atCF625292--2e-10At1g73180eukaryotic translation initiation factor-relatedO.I.H.G.S.X.
0.3336.00.96Zm.19200.1.S1_atCO517532hypothetical protein LOC100276374-4e-2At3g49660transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.3336.00.96Zm.4561.2.A1_x_atCO532693--6e+0At5g65520bindingO.I.H.G.S.X.
0.3336.00.96Zm.1674.1.S1_atAY106902.1hypothetical protein LOC100217253-9e-10At1g30470SIT4 phosphatase-associated family proteinO.I.H.G.S.X.
0.3233.40.95Zm.2689.1.A1_atBM350188--2e+0At5g43830unknown proteinO.I.H.G.S.X.
0.3233.40.96Zm.19059.1.A1_atCO521551hypothetical protein LOC100193008-4e-1At1g78170unknown proteinO.I.H.G.S.X.
0.3131.60.97Zm.5595.1.A1_atCD442436hypothetical protein LOC100278654-3e-34At2g29080ftsh3 (FtsH protease 3)O.I.H.G.S.X.
0.3029.80.90Zm.13351.1.S1_a_atAA979911protein kinase-2e-45At4g26610D6PKL1 (D6 PROTEIN KINASE LIKE 1)O.I.H.G.S.X.
0.3029.80.96Zm.12968.1.S1_atCO528187pyruvate dehydrogenase E1 component subunit beta-3e-62At1g30120PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA)O.I.H.G.S.X.
0.2928.10.96Zm.11984.1.A1_atAY107185.1PB1 domain containing protein-5e+0At5g25830zinc finger (GATA type) family proteinO.I.H.G.S.X.
0.2928.10.93Zm.6841.1.A1_atBM267487hypothetical protein LOC100273116-2e+0At4g35030protein kinase family proteinO.I.H.G.S.X.
0.2928.10.94Zm.4893.1.A1_atAW067307hypothetical protein LOC100276864-2e-7At5g11600unknown proteinO.I.H.G.S.X.
0.2928.10.95Zm.4474.1.S1_atCA402734hypothetical protein LOC100279979-3e+0At5g46720-O.I.H.G.S.X.
0.2928.10.96Zm.828.1.A1_atAI734461hypothetical protein LOC100277560-5e+0At3g21371unknown proteinO.I.H.G.S.X.
0.2928.10.98Zm.4006.1.A1_atBQ539204hypothetical protein LOC100216950-2e+0At4g22530embryo-abundant protein-relatedO.I.H.G.S.X.
0.2828.10.94Zm.199.1.S1_s_atAB008464.1sucrose transporter1-2e-2At1g22710SUC2 (SUCROSE-PROTON SYMPORTER 2)O.I.H.G.S.X.
0.2828.10.94Zm.5346.1.S1_x_atAY110712.1--1e-3At4g29080PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)O.I.H.G.S.X.
0.2828.10.95Zm.2980.1.S1_atAY112403.1--2e+0At1g29140pollen Ole e 1 allergen and extensin family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.199.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
20.999.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.699.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.798.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.298.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.797.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.397.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.397.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.596.3GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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