Co-expression analysis

Gene ID Zm.18903.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At5g07400: forkhead-associated domain-containing protein / FHA domain-containing protein (HF=7e-2)
Module size 6 genes
NF 0.70
%ile 91.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.98Zm.18903.1.A1_atCO530915--7e-2At5g07400forkhead-associated domain-containing protein / FHA domain-containing proteinO.I.H.G.S.X.
0.7389.90.98Zm.4099.2.A1_s_atAI770849hypothetical protein LOC100191159-8e-1At2g38870protease inhibitor, putativeO.I.H.G.S.X.
0.6179.50.97Zm.12132.3.S1_a_atAI461523hypothetical protein LOC100192680-4e-50At5g03240UBQ3 (POLYUBIQUITIN 3)O.I.H.G.S.X.
0.6077.80.98Zm.18590.1.A1_atAW562614exostosin-like-1e+0At5g22930unknown proteinO.I.H.G.S.X.
0.6077.80.99ZmAffx.1097.1.S1_atAW120085--1e+1At5g25770unknown proteinO.I.H.G.S.X.
0.3641.30.98Zm.1546.3.A1_x_atCK369824--1e-6At1g15270-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.199.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
20.999.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.699.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.798.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.298.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.797.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.397.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.397.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.596.3GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.215954.1.S1_at, orthologous to the query gene, Zm.18903.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5078.6PtpAffx.215954.1.S1_atAt5g07400hypothetical protein-9e-13At3g21430-O.I.H.G.S.X.
0.2747.1PtpAffx.201755.1.S1_atAt5g07400hypothetical protein-2e-99At1g06490ATGSL07 (glucan synthase-like 7)O.I.H.G.S.X.
0.2747.1Ptp.2257.1.S1_x_atAt5g07400hypothetical protein-1e-5At3g09390MT2A (METALLOTHIONEIN 2A)O.I.H.G.S.X.
0.2136.5Ptp.2257.3.S1_x_atAt5g07400hypothetical protein-8e-6At3g09390MT2A (METALLOTHIONEIN 2A)O.I.H.G.S.X.
0.0711.6Ptp.3677.1.S1_s_atAt5g07400hypothetical protein-0Atcg00900-O.I.H.G.S.X.
0.0711.6PtpAffx.206176.1.S1_atAt5g07400hypothetical protein-1e-17At4g29890choline monooxygenase, putative (CMO-like)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage