Co-expression analysis

Gene ID	Zm.18571.1.A1_at
Gene name	Hypothetical protein LOC100217207
Homology with Arabidopsis	Similar to At5g61790: calnexin 1 (CNX1) (HF=1e+0)
Module size	7 genes
NF	0.24
%ile	19.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	0.94	Zm.18571.1.A1_at	CO518311	Hypothetical protein LOC100217207	-	1e+0	At5g61790	calnexin 1 (CNX1)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.94	ZmAffx.1068.1.S1_at	AI941684	Hypothetical protein LOC100192986	-	3e+0	At3g25719	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.94	Zm.19206.1.A1_at	BE552928	hypothetical protein LOC100274600	-	5e-8	At2g16860	GCIP-interacting family protein	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.94	ZmAffx.978.1.A1_at	AI833953	-	-	6e-23	Atcg00770	-	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.94	Zm.10833.1.A1_at	AY109775.1	-	-	5e+0	At5g64140	RPS28 (RIBOSOMAL PROTEIN S28)	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.93	Zm.9241.1.A1_at	CK826930	-	-	2e-7	At4g23470	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.94	Zm.17951.1.A1_at	CF630424	-	-	1e+0	At5g16790	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.1	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM206307	Lower pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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