Co-expression analysis

Gene ID	Zm.18526.1.S1_at
Gene name	hypothetical protein LOC100272796
Homology with Arabidopsis	Similar to At5g13100: unknown protein (HF=6e-17)
Module size	22 genes
NF	0.39
%ile	43.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	86.5	0.96	Zm.18526.1.S1_at	CO522434	hypothetical protein LOC100272796	-	6e-17	At5g13100	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	75.1	0.98	Zm.3996.1.S1_at	CD436900	hypothetical protein LOC100274383	-	2e-11	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.97	Zm.11761.1.A1_at	BM380541	-	-	1e+1	At4g10170	synaptobrevin-related family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.2150.1.A1_a_at	CD977294	Hypothetical protein LOC100193916	-	4e-33	At5g20920	EIF2 BETA	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.97	Zm.791.1.S1_s_at	AY111675.1	hypothetical protein LOC100280140	-	3e+0	At4g16720	60S ribosomal protein L15 (RPL15A)	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.98	ZmAffx.1016.1.A1_at	AI881482	Hypothetical protein LOC100194117	-	1e-2	At4g19985	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.97	Zm.5851.8.S1_a_at	X85334.1	ZEM3	-	1e-7	At4g18960	AG (AGAMOUS)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.97	Zm.11992.1.A1_at	BM382475	-	-	3e+0	At5g41614	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.98	Zm.15421.1.S1_at	AY107122.1	-	-	1e+0	At3g42050	vacuolar ATP synthase subunit H family protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.97	Zm.18885.1.A1_at	CO530040	hypothetical protein LOC100276818	-	3e+0	At5g28780	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.97	Zm.12681.1.S1_at	CA399688	hypothetical protein LOC100278755	-	2e+0	At5g65670	IAA9 (INDOLE-3-ACETIC ACID INDUCIBLE 9)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.97	Zm.17331.1.A1_at	CF631030	-	-	1e-3	At5g51640	YLS7	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.98	Zm.328.1.S1_at	U89496.1	liguleless1	-	2e-1	At1g56530	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.98	Zm.5985.3.S1_at	CF041948	-	-	4e-28	At4g16340	SPK1 (SPIKE1)	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.97	Zm.17436.1.A1_at	CK347538	-	-	4e-1	At2g18970	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.1940.1.S1_at	AW507032	-	-	5e-1	At4g13615	four F5 protein-related / 4F5 protein-related	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.98	Zm.13679.1.A1_at	AW424469	chemocyanin	-	9e-5	At1g72230	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	Zm.4553.1.S1_at	BE238641	-	-	4e-1	At4g28860	ckl4 (Casein Kinase I-like 4)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.4367.1.S1_at	AY107325.1	mitochondrial import receptor subunit TOM22	-	1e-4	At5g43970	TOM22-V (TRANSLOCASE OF OUTER MEMBRANE 22-V)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.10393.1.S1_at	AI676981	-	-	2e+0	At5g11425	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.98	Zm.14476.2.A1_at	AY109949.1	Protein disulfide isomerase	-	1e-5	At3g54960	ATPDIL1-3 (PDI-LIKE 1-3)	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.98	Zm.10449.1.S1_at	BQ528465	hypothetical protein LOC100274604	-	5e-4	At4g17670	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.4	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.1	90.8	GSM253254	ZM_24h_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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