Co-expression analysis

Gene ID	Zm.18456.1.A1_at
Gene name	calmodulin binding protein
Homology with Arabidopsis	Similar to At2g21990: unknown protein (HF=9e+0)
Module size	7 genes
NF	0.40
%ile	46.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	75.1	0.90	Zm.18456.1.A1_at	CF635556	calmodulin binding protein	-	9e+0	At2g21990	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.90	Zm.11696.1.A1_at	BM380008	-	-	3e+0	At3g55750	60S ribosomal protein L35a (RPL35aD)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.96	Zm.17539.1.S1_at	CK369152	-	-	3e-5	At3g01540	DRH1 (DEAD BOX RNA HELICASE 1)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.93	Zm.15924.1.A1_at	CB351029	-	-	6e-2	At4g00880	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.94	Zm.4097.1.A1_at	BG266571	hypothetical protein LOC100280288	-	3e+0	At5g48890	transcription factor	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.94	Zm.13568.1.A1_at	AI714711	hypothetical protein LOC100272320	-	7e-12	At1g77440	PBC2	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.94	Zm.18429.1.A1_at	CO522415	hypothetical protein LOC100274071	-	6e+0	At5g44560	VPS2.2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.7	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM202314	Mo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.8	95.5	GSM290553	WS1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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