Co-expression analysis

Gene ID Zm.18388.1.A1_at
Gene name hypothetical protein LOC100273514
Homology with ArabidopsisSimilar to At3g46620: zinc finger (C3HC4-type RING finger) family protein (HF=1e-1)
Module size 6 genes
NF 0.56
%ile 74.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.97Zm.18388.1.A1_atCB604567hypothetical protein LOC100273514-1e-1At3g46620zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.7792.10.96Zm.828.1.A1_atAI734461hypothetical protein LOC100277560-5e+0At3g21371unknown proteinO.I.H.G.S.X.
0.5775.10.97Zm.12968.1.S1_atCO528187pyruvate dehydrogenase E1 component subunit beta-3e-62At1g30120PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA)O.I.H.G.S.X.
0.4455.70.97Zm.5917.1.A1_a_atBM337345hypothetical protein LOC100192679-2e+0At1g27970NTF2B (NUCLEAR TRANSPORT FACTOR 2B)O.I.H.G.S.X.
0.3945.60.97Zm.16482.2.A1_atBM337760--9e-19At3g0963060S ribosomal protein L4/L1 (RPL4A)O.I.H.G.S.X.
0.3336.00.97Zm.5595.1.A1_atCD442436hypothetical protein LOC100278654-3e-34At2g29080ftsh3 (FtsH protease 3)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9199.00.96Zm.6430.1.A1_atAY111839.1hypothetical protein LOC100277584-4e-1At2g17880DNAJ heat shock protein, putativeO.I.H.G.S.X.
0.5775.10.96Zm.12406.1.S1_atBM350949hypothetical protein LOC100191616-3e-3At2g47700zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5065.70.95Zm.4893.1.A1_atAW067307hypothetical protein LOC100276864-2e-7At5g11600unknown proteinO.I.H.G.S.X.
0.5065.70.97Zm.16482.3.A1_x_atCA40398460S ribosomal protein L4-6e-20At3g0963060S ribosomal protein L4/L1 (RPL4A)O.I.H.G.S.X.
0.5065.70.98Zm.15852.2.S1_a_atAY108720.1--1e-41At5g03430phosphoadenosine phosphosulfate (PAPS) reductase family proteinO.I.H.G.S.X.
0.4455.70.95Zm.34.4.A1_x_atAI667842--9e-1At4g32780phosphoinositide bindingO.I.H.G.S.X.
0.4455.70.97Zm.12819.1.S1_atCF6356153-isopropylmalate dehydratase small subunit 2-1e-1At3g58990aconitase C-terminal domain-containing proteinO.I.H.G.S.X.
0.4352.80.94Zm.4645.1.S1_atAY104285.1DAG protein-2e-17At3g15000-O.I.H.G.S.X.
0.4048.50.98Zm.5388.1.S1_atAW453245hypothetical protein LOC100193632-6e-23At3g09180unknown proteinO.I.H.G.S.X.
0.4048.50.98Zm.4462.1.A1_atAI714968--1e+1At4g00342unknown proteinO.I.H.G.S.X.
0.3844.20.95Zm.19103.1.A1_atAY104453.1Hypothetical protein LOC100193224-3e+0At4g09490RNase H domain-containing proteinO.I.H.G.S.X.
0.3844.20.91Zm.9986.1.S1_atBM350777--5e+0At4g34790auxin-responsive family proteinO.I.H.G.S.X.
0.3844.20.96Zm.18534.1.A1_atCO522076protein binding protein-2e+1At5g42567-O.I.H.G.S.X.
0.3641.30.94ZmAffx.607.1.S1_atAI715035--3e+0At1g78150unknown proteinO.I.H.G.S.X.
0.3641.30.98Zm.6439.1.A1_atAF076955.1eucaryotic initiation factor7-3e-12At5g35620LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)O.I.H.G.S.X.
0.3641.30.98ZmAffx.240.1.S1_atAI670252--3e+0At5g11610exostosin family proteinO.I.H.G.S.X.
0.3538.90.96Zm.10082.1.A1_atBM378776hypothetical protein LOC100279529-3e-10At5g18590kelch repeat-containing proteinO.I.H.G.S.X.
0.3538.90.98Zm.5441.1.S1_atCO528962hypothetical protein LOC100274317-3e+0At3g23130SUP (SUPERMAN)O.I.H.G.S.X.
0.3437.20.95Zm.17563.1.A1_atAI657247signal recognition particle 14 kDa protein-4e-4At2g43640signal recognition particle 14 kDa family protein / SRP14 family proteinO.I.H.G.S.X.
0.3336.00.93Zm.12712.1.S1_atCA404551--1e+0At3g26400EIF4B1O.I.H.G.S.X.
0.3336.00.94Zm.4468.2.A1_a_atBG266435hypothetical protein LOC100274345-5e-7At3g60260phagocytosis and cell motility protein ELMO1-relatedO.I.H.G.S.X.
0.3336.00.94Zm.12623.1.S1_atBQ620882--4e+0At1g34640unknown proteinO.I.H.G.S.X.
0.3336.00.95Zm.15871.2.S1_atAI668188Hypothetical protein LOC100216742-8e-1At2g04515unknown proteinO.I.H.G.S.X.
0.3336.00.97Zm.2218.1.A1_atAW313464--7e+0Atcg01300-O.I.H.G.S.X.
0.3336.00.97Zm.6011.1.A1_atAI738205hypothetical protein LOC100280191-2e-10At1g34420leucine-rich repeat family protein / protein kinase family proteinO.I.H.G.S.X.
0.3336.00.98Zm.5220.1.S1_atAI614989hypothetical protein LOC100279470-1e+0At5g36120CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),)O.I.H.G.S.X.
0.3233.40.92Zm.6509.1.S1_atCO528105hypothetical protein LOC100193730-5e-11At1g74640unknown proteinO.I.H.G.S.X.
0.3233.40.96Zm.19059.1.A1_atCO521551hypothetical protein LOC100193008-4e-1At1g78170unknown proteinO.I.H.G.S.X.
0.3131.60.92Zm.6349.1.A1_atCA830981hypothetical protein LOC100277279-1e-7At1g46264AT-HSFB4O.I.H.G.S.X.
0.3131.60.96Zm.15521.1.A1_atCF624536--7e-1At3g25950-O.I.H.G.S.X.
0.3131.60.97Zm.4561.2.A1_x_atCO532693--6e+0At5g65520bindingO.I.H.G.S.X.
0.3131.60.97Zm.9792.1.A1_atBM338998pleckstrin homology domain-containing protein 1-7e-3At5g05710pleckstrin homology (PH) domain-containing proteinO.I.H.G.S.X.
0.3131.60.97Zm.10315.1.S1_atAF461732.1uncoupling protein-6e-5At5g58970ATUCP2 (UNCOUPLING PROTEIN 2)O.I.H.G.S.X.
0.3029.80.97Zm.3484.1.A1_atAW438127hypothetical protein LOC100273241-2e+0At1g67700unknown proteinO.I.H.G.S.X.
0.2928.10.92Zm.12113.1.A1_atAW927483--6e+0At1g70480unknown proteinO.I.H.G.S.X.
0.2928.10.92Zm.9892.1.A1_atBM351413--6e-3At3g59060PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)O.I.H.G.S.X.
0.2928.10.94Zm.3130.2.A1_a_atBE345858hypothetical protein LOC100272828-2e-4At2g39410hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.2828.10.95Zm.2783.1.A1_atAY107993.1IDP1674 protein-2e-10At4g30890UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24)O.I.H.G.S.X.
0.2724.60.92Zm.599.1.S1_a_atAY093416.1chromomethylase-2e+0At5g49330AtMYB111 (myb domain protein 111)O.I.H.G.S.X.
0.2724.60.97Zm.4043.1.S1_atAW091252--3e-10At1g59750ARF1 (AUXIN RESPONSE FACTOR 1)O.I.H.G.S.X.
0.2622.70.94Zm.4456.1.A1_atAI714939hypothetical protein LOC100273649-4e+0At4g34790auxin-responsive family proteinO.I.H.G.S.X.
0.2622.70.94Zm.8282.1.A1_atBE051837--1e+0At1g52500ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1)O.I.H.G.S.X.
0.2622.70.97ZmAffx.1074.1.S1_atAI947680--1e+1At2g42210mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinO.I.H.G.S.X.
0.2521.30.95Zm.18466.1.A1_atCO532706hypothetical protein LOC100279872-2e+0At5g51050mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.2521.30.96Zm.4897.1.S1_atAI782873--2e+1At5g42770-O.I.H.G.S.X.
0.2521.30.97Zm.4667.1.A1_atBG266366hypothetical protein LOC100274574-4e-1At1g32780alcohol dehydrogenase, putativeO.I.H.G.S.X.
0.2521.30.98ZmAffx.1097.1.S1_atAW120085--1e+1At5g25770unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.898.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.198.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.598.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.898.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.793.2GSM205373Mo17 13 DAP endosperm tissue biological replicate 3GSE8275Non-additive and imprinted gene expression in hybrid maize endosperm_13DAPLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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