Co-expression analysis

Gene ID Zm.18388.1.A1_at
Gene name hypothetical protein LOC100273514
Homology with ArabidopsisSimilar to At3g46620: zinc finger (C3HC4-type RING finger) family protein (HF=1e-1)
Module size 6 genes
NF 0.56
%ile 74.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.97Zm.18388.1.A1_atCB604567hypothetical protein LOC100273514-1e-1At3g46620zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.7792.10.96Zm.828.1.A1_atAI734461hypothetical protein LOC100277560-5e+0At3g21371unknown proteinO.I.H.G.S.X.
0.5775.10.97Zm.12968.1.S1_atCO528187pyruvate dehydrogenase E1 component subunit beta-3e-62At1g30120PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA)O.I.H.G.S.X.
0.4455.70.97Zm.5917.1.A1_a_atBM337345hypothetical protein LOC100192679-2e+0At1g27970NTF2B (NUCLEAR TRANSPORT FACTOR 2B)O.I.H.G.S.X.
0.3945.60.97Zm.16482.2.A1_atBM337760--9e-19At3g0963060S ribosomal protein L4/L1 (RPL4A)O.I.H.G.S.X.
0.3336.00.97Zm.5595.1.A1_atCD442436hypothetical protein LOC100278654-3e-34At2g29080ftsh3 (FtsH protease 3)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.898.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.198.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.598.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.898.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.793.2GSM205373Mo17 13 DAP endosperm tissue biological replicate 3GSE8275Non-additive and imprinted gene expression in hybrid maize endosperm_13DAPLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig23383_at, orthologous to the query gene, Zm.18388.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5066.9Contig23383_atAt3g46620--7e-6At1g06850AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52)O.I.H.G.S.X.
0.3647.1Contig610_atAt3g46620--1e-1At3g01500CA1 (CARBONIC ANHYDRASE 1)O.I.H.G.S.X.
0.1514.1Contig20647_atAt3g46620--2e+1At5g03995unknown proteinO.I.H.G.S.X.
0.1514.1Contig4451_s_atAt3g46620--4e-68At4g32410CESA1 (CELLULOSE SYNTHASE 1)O.I.H.G.S.X.
0.086.5Contig22514_atAt3g46620--8e-2At5g59290UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE 3)O.I.H.G.S.X.
0.075.8Contig25688_atAt3g46620--5e+0At3g01210nucleic acid binding / oxidoreductaseO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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