Co-expression analysis

Gene ID	Zm.18388.1.A1_at
Gene name	hypothetical protein LOC100273514
Homology with Arabidopsis	Similar to At3g46620: zinc finger (C3HC4-type RING finger) family protein (HF=1e-1)
Module size	6 genes
NF	0.56
%ile	74.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.97	Zm.18388.1.A1_at	CB604567	hypothetical protein LOC100273514	-	1e-1	At3g46620	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.96	Zm.828.1.A1_at	AI734461	hypothetical protein LOC100277560	-	5e+0	At3g21371	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.97	Zm.12968.1.S1_at	CO528187	pyruvate dehydrogenase E1 component subunit beta	-	3e-62	At1g30120	PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.5917.1.A1_a_at	BM337345	hypothetical protein LOC100192679	-	2e+0	At1g27970	NTF2B (NUCLEAR TRANSPORT FACTOR 2B)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.97	Zm.16482.2.A1_at	BM337760	-	-	9e-19	At3g09630	60S ribosomal protein L4/L1 (RPL4A)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.5595.1.A1_at	CD442436	hypothetical protein LOC100278654	-	3e-34	At2g29080	ftsh3 (FtsH protease 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.8	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7	93.2	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.76052.1.S1_at, orthologous to the query gene, Zm.18388.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.45	63.9	GmaAffx.76052.1.S1_at	At3g46620	bZIP transcription factor bZIP43	-	5e-22	At1g06850	AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52)	O.I.	H.G.	S.X.	Please select
0.39	54.5	GmaAffx.79108.1.S1_at	At3g46620	-	-	1e-6	At1g09390	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.10764.1.S1_at	At3g46620	-	-	3e-50	At1g11680	CYP51G1 (CYTOCHROME P450 51G1)	O.I.	H.G.	S.X.	Please select
0.33	46.1	Gma.8846.2.S1_at	At3g46620	-	-	6e-15	At5g42420	transporter-related	O.I.	H.G.	S.X.	Please select
0.31	42.2	Gma.10764.2.S1_x_at	At3g46620	-	-	3e+0	At1g69880	ATH8 (thioredoxin H-type 8)	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.11254.3.S1_a_at	At3g46620	-	-	4e+0	At4g13790	auxin-responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.27	35.7	GmaAffx.71621.1.S1_at	At3g46620	-	-	2e-3	At4g20430	subtilase family protein	O.I.	H.G.	S.X.	Please select
0.12	15.1	GmaAffx.43743.1.S1_at	At3g46620	-	-	7e-20	At1g09160	protein phosphatase 2C-related / PP2C-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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