CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.18388.1.A1_at

Gene name hypothetical protein LOC100273514
Homology with Arabidopsis Similar to At3g46620: zinc finger (C3HC4-type RING finger) family protein (HF=1e-1)

Module size 6 genes

NF 0.56

%ile 74.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.97 Zm.18388.1.A1_at CB604567 hypothetical protein LOC100273514 - 1e-1 At3g46620 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.77 92.1 0.96 Zm.828.1.A1_at AI734461 hypothetical protein LOC100277560 - 5e+0 At3g21371 unknown protein O.I. H.G. S.X.
0.57 75.1 0.97 Zm.12968.1.S1_at CO528187 pyruvate dehydrogenase E1 component subunit beta - 3e-62 At1g30120 PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA) O.I. H.G. S.X.
0.44 55.7 0.97 Zm.5917.1.A1_a_at BM337345 hypothetical protein LOC100192679 - 2e+0 At1g27970 NTF2B (NUCLEAR TRANSPORT FACTOR 2B) O.I. H.G. S.X.
0.39 45.6 0.97 Zm.16482.2.A1_at BM337760 - - 9e-19 At3g09630 60S ribosomal protein L4/L1 (RPL4A) O.I. H.G. S.X.
0.33 36.0 0.97 Zm.5595.1.A1_at CD442436 hypothetical protein LOC100278654 - 3e-34 At2g29080 ftsh3 (FtsH protease 3) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.8 98.8 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1 98.7 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5 98.6 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8 98.5 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4 98.4 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8 98.3 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1 98.2 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0 98.2 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6 97.9 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7 93.2 GSM205373 Mo17 13 DAP endosperm tissue biological replicate 3 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g46620, orthologous to the query gene, Zm.18388.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.42 53.9 At3g46620 823815 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFVB O.I. H.G. S.X.
0.67 81.6 At3g28340 822462 GATL10 (Galacturonosyltransferase-like 10) Encodes a protein with putative galacturonosyltransferase activity. O.I. H.G. S.X.
0.63 78.1 At4g29780 829100 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MPF O.I. H.G. S.X.
0.60 75.7 At1g74450 843786 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.55 70.6 At1g80840 844423 WRKY40 Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. O.I. H.G. S.X.
0.53 68.6 At2g05050 3767735 catalytic F:catalytic activity;P:biological_process unknown;C:cellular_component unknown O.I. H.G. S.X.
0.48 62.5 At4g17500 827464 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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