Co-expression analysis

Gene ID	Zm.18364.1.S1_at
Gene name	hypothetical protein LOC100279528
Homology with Arabidopsis	Similar to At1g66890: - (HF=6e-2)
Module size	12 genes
NF	0.40
%ile	45.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	81.1	0.94	Zm.18364.1.S1_at	CO526339	hypothetical protein LOC100279528	-	6e-2	At1g66890	-	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.95	Zm.15550.1.S1_a_at	AI491343	hypothetical protein LOC100191653 /// protein phosphatase 2C	-	5e-9	At5g66080	protein phosphatase 2C family protein / PP2C family protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.96	Zm.11180.1.A1_at	BM339608	-	-	2e+1	At5g27238	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.96	Zm.4556.1.S1_at	AI734775	hypothetical protein LOC100191380	-	2e+0	At5g58480	glycosyl hydrolase family 17 protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.96	Zm.9752.1.A1_at	CF629450	hypothetical protein LOC100279701	-	2e+0	At5g05370	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.95	Zm.13534.1.A1_at	CF625575	nicotinate phosphoribosyltransferase-like protein	-	2e-5	At2g23420	NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.96	Zm.5131.1.A1_at	AI600972	-	-	5e+0	At5g49620	AtMYB78 (myb domain protein 78)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.95	Zm.4188.1.A1_at	AW438194	hypothetical protein LOC100277507	-	6e+0	At4g07400	VFB3 (VIER F-BOX PROTEINE 3)	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.95	Zm.11178.1.A1_at	AI745736	-	-	5e-1	At5g28490	LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.95	Zm.12007.1.A1_at	BM382593	-	-	2e+0	At4g28500	ANAC073 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 73)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.96	Zm.3058.1.A1_at	BM338821	glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform	-	6e-36	At3g27300	G6PD5 (glucose-6-phosphate dehydrogenase 5)	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.95	Zm.17611.1.S1_at	CK368079	hypothetical protein LOC100274854	-	8e-2	At1g27640	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.8	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage