Co-expression analysis

Gene ID Zm.1835.1.A1_at
Gene name cortical cell-delineating protein
Homology with ArabidopsisSimilar to At2g25820: transcription factor (HF=2e+0)
Module size 6 genes
NF 0.48
%ile 59.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.00.97Zm.1835.1.A1_atCK368819cortical cell-delineating protein-2e+0At2g25820transcription factorO.I.H.G.S.X.
0.6785.80.97Zm.5965.1.A1_atAI665966Hypothetical protein LOC100192560-2e+0At5g19140AILP1O.I.H.G.S.X.
0.4455.70.98Zm.5093.1.A1_atAI600800GAGA-binding protein-4e-4At1g14685BPC2 (BASIC PENTACYSTEINE 2)O.I.H.G.S.X.
0.4455.70.98Zm.5180.1.A1_atAI612313--1e+1At5g27090AGL54O.I.H.G.S.X.
0.2928.10.97Zm.13648.1.S1_atAY107241.1caleosin related protein-2e+0At1g70670caleosin-related family proteinO.I.H.G.S.X.
0.2216.90.97ZmAffx.1118.2.A1_atAW267189--8e-1At2g27360lipase, putativeO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6077.80.96Zm.17534.1.S1_atCK369298hypothetical protein LOC100192824 /// hypothetical protein LOC100192825-2e+0At5g36710unknown proteinO.I.H.G.S.X.
0.5571.60.97Zm.15494.1.A1_atAY107285.1hypothetical protein LOC100276709-5e-1At1g67360rubber elongation factor (REF) family proteinO.I.H.G.S.X.
0.5065.70.96Zm.11805.1.A1_atCK371036gibberellin-regulated protein 1-3e-1At5g66675unknown proteinO.I.H.G.S.X.
0.4352.80.96Zm.1480.1.A1_atCA403094--1e+0At1g28330DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)O.I.H.G.S.X.
0.4352.80.97Zm.17460.1.S1_atCK327598--3e+0At1g51970unknown proteinO.I.H.G.S.X.
0.4048.50.94Zm.3801.1.S1_x_atBU097753hypothetical protein LOC100277001-7e-1At4g01590unknown proteinO.I.H.G.S.X.
0.4048.50.95Zm.8270.1.A1_atAY649984.1thioesterase family protein-5e+0At4g35980unknown proteinO.I.H.G.S.X.
0.4048.50.96Zm.8180.1.S1_atCF006239Starch synthase isoform zSTSII-1-8e-18At3g01180AtSS2 (starch synthase 2)O.I.H.G.S.X.
0.4048.50.97Zm.14307.1.S1_atBQ486034adenylate kinase-2e-1At2g39270adenylate kinase family proteinO.I.H.G.S.X.
0.4048.50.97Zm.5676.1.A1_atAY103939.1--3e-1At5g14710-O.I.H.G.S.X.
0.3844.20.98Zm.2997.1.S1_atCD983066REX1 DNA Repair family protein-6e+0At5g35525unknown proteinO.I.H.G.S.X.
0.3641.30.96Zm.7727.2.A1_atBU050759hypothetical protein LOC100272686-1e-1At4g13800permease-relatedO.I.H.G.S.X.
0.3538.90.97Zm.17516.1.S1_atCF623514hypothetical protein LOC100216611-3e-12At5g63650SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)O.I.H.G.S.X.
0.3336.00.93Zm.17142.1.A1_atCF972427--1e-1At3g15980coatomer protein complex, subunit beta 2 (beta prime), putativeO.I.H.G.S.X.
0.3336.00.94Zm.18410.1.S1_atCO532504--4e-15At2g44770phagocytosis and cell motility protein ELMO1-relatedO.I.H.G.S.X.
0.3336.00.96Zm.4197.1.A1_atAI737259--2e-2At5g63950CHR24 (chromatin remodeling 24)O.I.H.G.S.X.
0.3336.00.96Zm.6303.1.S1_atAF064707.1--8e-27At5g20950glycosyl hydrolase family 3 proteinO.I.H.G.S.X.
0.3336.00.97Zm.16409.1.A1_atCF623827--2e-2At4g22540ORP2A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A)O.I.H.G.S.X.
0.3233.40.97Zm.8617.1.A1_atBM074921hypothetical protein LOC100194322-2e+0At4g29810ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2)O.I.H.G.S.X.
0.2928.10.93Zm.8099.1.S1_atBM379930--5e+0At5g63905unknown proteinO.I.H.G.S.X.
0.2928.10.96Zm.19328.1.A1_atCO528598hypothetical protein LOC100273799-1e-2At5g22310unknown proteinO.I.H.G.S.X.
0.2928.10.98Zm.18374.1.A1_atCO521737hypothetical protein LOC100191144-1e-1At1g21890nodulin MtN21 family proteinO.I.H.G.S.X.
0.2724.60.95Zm.17612.1.S1_atCK368134--1e-1At5g66675unknown proteinO.I.H.G.S.X.
0.2724.60.97Zm.13825.1.S1_atAY104501.1--9e-7At3g01910SOX (SULFITE OXIDASE)O.I.H.G.S.X.
0.2521.30.96ZmAffx.1181.1.A1_atAW927689esterase PIR7A-2e-1At5g56140KH domain-containing proteinO.I.H.G.S.X.
0.2521.30.96Zm.6042.1.S1_atCA401335--1e-16At4g38600KAK (KAKTUS)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.199.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
20.599.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.799.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.498.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.898.7GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.298.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.198.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.198.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.494.9GSM320460protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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