Co-expression analysis

Gene ID Zm.1829.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g17710: EMB1241 (embryo defective 1241) (HF=3e+0)
Module size 6 genes
NF 0.48
%ile 61.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6785.80.92Zm.1829.1.S1_atAY103809.1--3e+0At5g17710EMB1241 (embryo defective 1241)O.I.H.G.S.X.
0.6785.80.92Zm.18531.1.A1_atBE575145hypothetical protein LOC100192889-2e+0At4g21280oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)O.I.H.G.S.X.
0.6179.50.92Zm.10472.1.A1_atAY112022.1Hypothetical protein LOC100216888-3e-12At1g80780CCR4-NOT transcription complex protein, putativeO.I.H.G.S.X.
0.5065.70.94Zm.14068.1.S1_atAI920492vacuolar protein-sorting protein 45-2e-23At1g77140VPS45 (VACUOLAR PROTEIN SORTING 45)O.I.H.G.S.X.
0.4251.30.92Zm.5253.1.S1_atBM08061960S ribosomal protein L34-5e-19At3g2890060S ribosomal protein L34 (RPL34C)O.I.H.G.S.X.
0.2014.20.92Zm.18561.1.A1_atCO517421hypothetical protein LOC100193602-1e-1At5g04660CYP77A4O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5369.10.86Zm.18512.1.A1_atCO518706hypothetical protein LOC100280076-2e+1At3g58000VQ motif-containing proteinO.I.H.G.S.X.
0.5065.70.90Zm.3892.5.A1_atBM07963460S ribosomal protein L28-6e-7At2g1973060S ribosomal protein L28 (RPL28A)O.I.H.G.S.X.
0.4759.90.86Zm.12050.1.A1_atBM416823early flowering 4-1e+0At5g16030unknown proteinO.I.H.G.S.X.
0.4658.40.85Zm.11868.1.A1_atBM381367--1e+0At5g22380anac090 (Arabidopsis NAC domain containing protein 90)O.I.H.G.S.X.
0.4455.70.92Zm.6946.2.S1_atCO528668--3e-6At1g11680CYP51G1 (CYTOCHROME P450 51G1)O.I.H.G.S.X.
0.4352.80.91Zm.1274.1.S1_atCO533399hypothetical protein LOC100272786-7e-1At2g38550unknown proteinO.I.H.G.S.X.
0.4048.50.91Zm.4276.1.A1_atAI834007PHD finger protein-5e-18At3g42790AL3 (ALFIN-LIKE 3)O.I.H.G.S.X.
0.4048.50.93Zm.4193.1.A1_atAY106195.1DANA2-7e+0At5g19810proline-rich extensin-like family proteinO.I.H.G.S.X.
0.3641.30.90Zm.19050.1.S1_atCA829470hypothetical protein LOC100274252-5e+0At5g01880zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3641.30.91Zm.8049.1.S1_atCF009485hypothetical protein LOC100272989-3e-3At4g05330AGD13 (ARF-GAP domain 13)O.I.H.G.S.X.
0.3538.90.90Zm.11333.1.A1_atAY108490.1proline-rich cell wall protein-like-2e-4At5g37200zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3336.00.85Zm.11652.1.A1_atBM379695hypothetical protein LOC100194255-6e-3At4g02690glutamate bindingO.I.H.G.S.X.
0.3336.00.85Zm.13558.1.A1_atBQ163517--1e-3At1g26340CB5-A (CYTOCHROME B5 ISOFORM A)O.I.H.G.S.X.
0.3336.00.88Zm.1296.1.S1_atCF623659hypothetical protein LOC100193371-7e-4At5g62460zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3336.00.92ZmAffx.521.1.A1_atAI711634hypothetical protein LOC100193955-3e+0At5g27880zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.3029.80.89Zm.8060.1.A1_atBQ538589nodulin protein-2e-1At3g13857unknown proteinO.I.H.G.S.X.
0.2622.70.90Zm.1006.1.A1_atBE639439--1e-16At2g14050MCM9O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.897.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.897.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.697.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.697.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.397.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.897.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.893.5GSM162266Wild type 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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