Co-expression analysis

Gene ID	Zm.1829.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g17710: EMB1241 (embryo defective 1241) (HF=3e+0)
Module size	6 genes
NF	0.48
%ile	61.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.92	Zm.1829.1.S1_at	AY103809.1	-	-	3e+0	At5g17710	EMB1241 (embryo defective 1241)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.92	Zm.18531.1.A1_at	BE575145	hypothetical protein LOC100192889	-	2e+0	At4g21280	oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.92	Zm.10472.1.A1_at	AY112022.1	Hypothetical protein LOC100216888	-	3e-12	At1g80780	CCR4-NOT transcription complex protein, putative	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.94	Zm.14068.1.S1_at	AI920492	vacuolar protein-sorting protein 45	-	2e-23	At1g77140	VPS45 (VACUOLAR PROTEIN SORTING 45)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.92	Zm.5253.1.S1_at	BM080619	60S ribosomal protein L34	-	5e-19	At3g28900	60S ribosomal protein L34 (RPL34C)	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.92	Zm.18561.1.A1_at	CO517421	hypothetical protein LOC100193602	-	1e-1	At5g04660	CYP77A4	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.8	97.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

A co-expression module including the grape gene, 1614594_at, orthologous to the query gene, Zm.1829.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1614594_at	At5g17710	-	-	7e-7	At1g79920	ATP binding	O.I.	H.G.	S.X.	Please select
0.15	15.6	1617559_at	At5g17710	hypothetical protein LOC100252408	-	6e-6	At2g02560	CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED)	O.I.	H.G.	S.X.	Please select
0.14	14.4	1622553_a_at	At5g17710	hypothetical protein LOC100267624	-	1e-34	At5g18190	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.12	12.1	1619955_at	At5g17710	hypothetical protein LOC100265296	-	1e-5	At3g15970	Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.11	11.3	1617914_at	At5g17710	hypothetical protein LOC100255442	-	1e+0	At1g65280	heat shock protein binding	O.I.	H.G.	S.X.	Please select
0.09	9.4	1613086_at	At5g17710	hypothetical protein LOC100243999	-	9e-66	At3g48820	glycosyl transferase family 29 protein / sialyltransferase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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