Co-expression analysis

Gene ID Zm.1829.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g17710: EMB1241 (embryo defective 1241) (HF=3e+0)
Module size 6 genes
NF 0.48
%ile 61.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6785.80.92Zm.1829.1.S1_atAY103809.1--3e+0At5g17710EMB1241 (embryo defective 1241)O.I.H.G.S.X.
0.6785.80.92Zm.18531.1.A1_atBE575145hypothetical protein LOC100192889-2e+0At4g21280oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)O.I.H.G.S.X.
0.6179.50.92Zm.10472.1.A1_atAY112022.1Hypothetical protein LOC100216888-3e-12At1g80780CCR4-NOT transcription complex protein, putativeO.I.H.G.S.X.
0.5065.70.94Zm.14068.1.S1_atAI920492vacuolar protein-sorting protein 45-2e-23At1g77140VPS45 (VACUOLAR PROTEIN SORTING 45)O.I.H.G.S.X.
0.4251.30.92Zm.5253.1.S1_atBM08061960S ribosomal protein L34-5e-19At3g2890060S ribosomal protein L34 (RPL34C)O.I.H.G.S.X.
0.2014.20.92Zm.18561.1.A1_atCO517421hypothetical protein LOC100193602-1e-1At5g04660CYP77A4O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.897.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.897.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.697.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.697.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.397.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.897.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.893.5GSM162266Wild type 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.131810.1.S1_at, orthologous to the query gene, Zm.1829.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9699.8PtpAffx.131810.1.S1_atAt5g17710hypothetical protein-1e-14At3g23620brix domain-containing proteinO.I.H.G.S.X.
0.4673.7PtpAffx.101757.1.A1_s_atAt5g17710hypothetical protein-4e-16At4g34910DEAD/DEAH box helicase, putative (RH16)O.I.H.G.S.X.
0.4067.0Ptp.5633.1.S1_x_atAt5g17710--9e-37At4g3467040S ribosomal protein S3A (RPS3aB)O.I.H.G.S.X.
0.4067.0Ptp.5765.1.S1_s_atAt5g17710hypothetical protein-3e-30At1g33140PGY2 (PIGGYBACK2)O.I.H.G.S.X.
0.3661.6Ptp.1851.1.S1_x_atAt5g17710hypothetical protein-8e-58At1g70600structural constituent of ribosomeO.I.H.G.S.X.
0.3661.6Ptp.5633.1.S1_atAt5g17710hypothetical protein-9e-37At4g3467040S ribosomal protein S3A (RPS3aB)O.I.H.G.S.X.
0.3661.6PtpAffx.14802.1.A1_s_atAt5g17710hypothetical protein-5e-62At2g3939060S ribosomal protein L35 (RPL35B)O.I.H.G.S.X.
0.3661.6Ptp.299.1.A1_s_atAt5g17710hypothetical protein-2e-10At3g49080ribosomal protein S9 family proteinO.I.H.G.S.X.
0.3357.5Ptp.1587.1.S1_s_atAt5g17710hypothetical protein-1e-50At2g0522040S ribosomal protein S17 (RPS17B)O.I.H.G.S.X.
0.3255.2Ptp.2338.1.S1_s_atAt5g17710hypothetical protein-5e+0At4g09810transporter-relatedO.I.H.G.S.X.
0.3153.7PtpAffx.120425.1.A1_atAt5g17710hypothetical protein-9e-2At5g10950cylicin-relatedO.I.H.G.S.X.
0.3153.7Ptp.4250.1.S1_atAt5g17710hypothetical protein-4e-8At1g25260acidic ribosomal protein P0-relatedO.I.H.G.S.X.
0.2950.5PtpAffx.209444.1.S1_atAt5g17710hypothetical protein-3e-28At3g10530transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.2950.5Ptp.3122.1.S1_x_atAt5g17710hypothetical protein-4e-17At3g1009040S ribosomal protein S28 (RPS28A)O.I.H.G.S.X.
0.2950.5Ptp.4446.1.A1_s_atAt5g17710hypothetical protein-2e-118At5g11170ATP binding / ATP-dependent helicase/ helicase/ nucleic acid bindingO.I.H.G.S.X.
0.2543.6PtpAffx.18640.1.A1_s_atAt5g17710hypothetical protein-3e-45At5g1838040S ribosomal protein S16 (RPS16C)O.I.H.G.S.X.
0.2543.6Ptp.5765.1.S1_x_atAt5g17710hypothetical protein-3e-30At1g33140PGY2 (PIGGYBACK2)O.I.H.G.S.X.
0.2441.8PtpAffx.1025.1.A1_x_atAt5g17710hypothetical protein-2e-21At1g17880nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putativeO.I.H.G.S.X.
0.2441.8PtpAffx.29901.1.S1_atAt5g17710hypothetical protein-3e-87At4g24830arginosuccinate synthase familyO.I.H.G.S.X.
0.2340.5PtpAffx.609.1.A1_s_atAt5g17710hypothetical protein-6e-28At2g1973060S ribosomal protein L28 (RPL28A)O.I.H.G.S.X.
0.2238.3PtpAffx.17093.1.S1_atAt5g17710hypothetical protein-7e-6At4g37660ribosomal protein L12 family proteinO.I.H.G.S.X.
0.2238.3PtpAffx.697.1.S1_atAt5g17710hypothetical protein-4e-7At5g5729060S acidic ribosomal protein P3 (RPP3B)O.I.H.G.S.X.
0.2136.5Ptp.6543.1.S1_s_atAt5g17710hypothetical protein-2e-121At4g15900PRL1 (PLEIOTROPIC REGULATORY LOCUS 1)O.I.H.G.S.X.
0.2034.6PtpAffx.115389.1.S1_s_atAt5g17710hypothetical protein-2e-45At1g26550peptidyl-prolyl cis-trans isomerase PPIC-type family proteinO.I.H.G.S.X.
0.1932.7PtpAffx.161941.1.A1_atAt5g17710hypothetical protein-2e-28At5g38890exoribonuclease-relatedO.I.H.G.S.X.
0.1626.9Ptp.1743.1.A1_a_atAt5g17710hypothetical protein-3e-45At4g26300emb1027 (embryo defective 1027)O.I.H.G.S.X.
0.1626.9Ptp.2156.1.S1_s_atAt5g17710--8e-21At4g09320NDPK1O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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