Co-expression analysis

Gene ID Zm.1829.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g17710: EMB1241 (embryo defective 1241) (HF=3e+0)
Module size 6 genes
NF 0.48
%ile 61.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6785.80.92Zm.1829.1.S1_atAY103809.1--3e+0At5g17710EMB1241 (embryo defective 1241)O.I.H.G.S.X.
0.6785.80.92Zm.18531.1.A1_atBE575145hypothetical protein LOC100192889-2e+0At4g21280oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)O.I.H.G.S.X.
0.6179.50.92Zm.10472.1.A1_atAY112022.1Hypothetical protein LOC100216888-3e-12At1g80780CCR4-NOT transcription complex protein, putativeO.I.H.G.S.X.
0.5065.70.94Zm.14068.1.S1_atAI920492vacuolar protein-sorting protein 45-2e-23At1g77140VPS45 (VACUOLAR PROTEIN SORTING 45)O.I.H.G.S.X.
0.4251.30.92Zm.5253.1.S1_atBM08061960S ribosomal protein L34-5e-19At3g2890060S ribosomal protein L34 (RPL34C)O.I.H.G.S.X.
0.2014.20.92Zm.18561.1.A1_atCO517421hypothetical protein LOC100193602-1e-1At5g04660CYP77A4O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.897.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.897.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.697.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.697.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.397.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.897.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.893.5GSM162266Wild type 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig6079_s_at, orthologous to the query gene, Zm.1829.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8795.0Contig6079_s_atAt5g17710--4e-2At3g23620brix domain-containing proteinO.I.H.G.S.X.
0.3240.3Contig4647_atAt5g17710--3e-3At2g37990ribosome biogenesis regulatory protein (RRS1) family proteinO.I.H.G.S.X.
0.2835.5Contig6981_atAt5g17710--4e-5At4g00170vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.2732.1Contig9642_atAt5g17710--1e-13At4g27960UBC9 (UBIQUITIN CONJUGATING ENZYME 9)O.I.H.G.S.X.
0.2630.4Contig13185_atAt5g17710--5e-3At3g18520HDA15O.I.H.G.S.X.
0.2528.9Contig13516_atAt5g17710--2e+0At1g35210unknown proteinO.I.H.G.S.X.
0.2528.9Contig6066_atAt5g17710--4e+0At5g23640unknown proteinO.I.H.G.S.X.
0.2427.2Contig5074_atAt5g17710--4e-1At3g54560HTA11O.I.H.G.S.X.
0.2427.2Contig6616_atAt5g17710--1e-57At4g35260IDH1 (ISOCITRATE DEHYDROGENASE 1)O.I.H.G.S.X.
0.2326.1Contig12434_atAt5g17710--2e-6At4g30930NFD1 (NUCLEAR FUSION DEFECTIVE 1)O.I.H.G.S.X.
0.2224.2Contig10829_atAt5g17710--8e+0At5g53720RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.2224.2Contig4172_atAt5g17710--2e-2At3g52090NRPB11O.I.H.G.S.X.
0.2224.2Contig7963_atAt5g17710--9e-12At5g63310NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)O.I.H.G.S.X.
0.2122.6Contig5283_atAt5g17710--1e-2At1g25280AtTLP10 (TUBBY LIKE PROTEIN 10)O.I.H.G.S.X.
0.2021.1Contig8629_atAt5g17710--3e-6At2g17190ubiquitin family proteinO.I.H.G.S.X.
0.1919.6Contig10090_s_atAt5g17710--3e-1At1g03260-O.I.H.G.S.X.
0.1919.6Contig4949_atAt5g17710--3e-53At5g13000ATGSL12 (glucan synthase-like 12)O.I.H.G.S.X.
0.1716.9Contig3171_atAt5g17710--7e-3At3g15360TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4)O.I.H.G.S.X.
0.1412.9Contig9903_atAt5g17710--1e-2At3g20500PAP18 (PURPLE ACID PHOSPHATASE 18)O.I.H.G.S.X.
0.1311.6Contig7821_atAt5g17710--3e-3At1g25420unknown proteinO.I.H.G.S.X.
0.075.8Contig11346_atAt5g17710--8e-1At1g6743060S ribosomal protein L17 (RPL17B)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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