Co-expression analysis

Gene ID Zm.1829.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g17710: EMB1241 (embryo defective 1241) (HF=3e+0)
Module size 6 genes
NF 0.48
%ile 61.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6785.80.92Zm.1829.1.S1_atAY103809.1--3e+0At5g17710EMB1241 (embryo defective 1241)O.I.H.G.S.X.
0.6785.80.92Zm.18531.1.A1_atBE575145hypothetical protein LOC100192889-2e+0At4g21280oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)O.I.H.G.S.X.
0.6179.50.92Zm.10472.1.A1_atAY112022.1Hypothetical protein LOC100216888-3e-12At1g80780CCR4-NOT transcription complex protein, putativeO.I.H.G.S.X.
0.5065.70.94Zm.14068.1.S1_atAI920492vacuolar protein-sorting protein 45-2e-23At1g77140VPS45 (VACUOLAR PROTEIN SORTING 45)O.I.H.G.S.X.
0.4251.30.92Zm.5253.1.S1_atBM08061960S ribosomal protein L34-5e-19At3g2890060S ribosomal protein L34 (RPL34C)O.I.H.G.S.X.
0.2014.20.92Zm.18561.1.A1_atCO517421hypothetical protein LOC100193602-1e-1At5g04660CYP77A4O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.897.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.897.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.697.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.697.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.397.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.897.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.893.5GSM162266Wild type 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.C4000120_at, orthologous to the query gene, Zm.1829.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9298.9PsAffx.C4000120_atAt5g17710--2e+0At4g15800RALFL33 (ralf-like 33)O.I.H.G.S.X.
0.7589.5PsAffx.C259000019_atAt5g17710--3e+0At4g11970YT521-B-like family proteinO.I.H.G.S.X.
0.7288.1PsAffx.CL157Contig1_atAt5g17710--2e-3At5g55190RAN3 (RAN GTPASE 3)O.I.H.G.S.X.
0.7087.1PsAffx.psML008xI07f_s_atAt5g17710--6e-1At4g26930MYB97 (myb domain protein 97)O.I.H.G.S.X.
0.7087.1PsAffx.C263000004_atAt5g17710--4e-1At2g23780zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6886.4PsAffx.CL230Contig1_atAt5g17710--1e-2At2g2014026S protease regulatory complex subunit 4, putativeO.I.H.G.S.X.
0.6483.4PsAffx.CL403Contig1_atAt5g17710--6e-6At4g38740ROC1 (ROTAMASE CYP 1)O.I.H.G.S.X.
0.6483.4PsAffx.CL821Contig1_atAt5g17710--1e+0At3g25170RALFL26 (ralf-like 26)O.I.H.G.S.X.
0.6483.4PsAffx.CL199Contig1_atAt5g17710--2e+0At4g19740catalytic/ cation binding / chitinase/ hydrolase, hydrolyzing O-glycosyl compoundsO.I.H.G.S.X.
0.6483.4PsAffx.CL887Contig1_atAt5g17710--6e-3At2g46780RNA binding / nucleic acid binding / nucleotide bindingO.I.H.G.S.X.
0.6181.8PsAffx.CL264Contig1_atAt5g17710--3e+1At4g13830J20 (DNAJ-LIKE 20)O.I.H.G.S.X.
0.6181.8PsAffx.CL2390Contig1_s_atAt5g17710--3e+0At4g24080ALL1 (Aldolase like)O.I.H.G.S.X.
0.6080.7PsAffx.C65000018_s_atAt5g17710--2e+0At3g44740ATP binding / aminoacyl-tRNA ligase/ glycine-tRNA ligase/ nucleotide bindingO.I.H.G.S.X.
0.5878.8PsAffx.CL521Contig1_atAt5g17710--2e+0At3g22070proline-rich family proteinO.I.H.G.S.X.
0.5878.8PsAffx.CL66Contig4_atAt5g17710--2e+0At3g49470NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)O.I.H.G.S.X.
0.5878.8PsAffx.CL2458Contig1_atAt5g17710--5e-6At1g4500026S proteasome regulatory complex subunit p42D, putativeO.I.H.G.S.X.
0.5878.8PsAffx.CL1316Contig1_s_atAt5g17710--3e-1At2g27580zinc finger (AN1-like) family proteinO.I.H.G.S.X.
0.5778.8PsAffx.CL57Contig1_atAt5g17710--6e-4At1g77930DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.5778.8PsAffx.CL129Contig1_atAt5g17710--5e+0At1g10840TIF3H1O.I.H.G.S.X.
0.5576.3PsAffx.CL172Contig1_atAt5g17710--2e+0At4g02840small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeO.I.H.G.S.X.
0.5576.3PsAffx.CL2042Contig1_atAt5g17710--1e+0At1g42080unknown proteinO.I.H.G.S.X.
0.5576.3PsAffx.CL185Contig1_atAt5g17710--1e-3At3g09440heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3)O.I.H.G.S.X.
0.5474.8PsAffx.CL1152Contig1_s_atAt5g17710--4e+0At3g07525ATG10 (autophagy 10)O.I.H.G.S.X.
0.5474.8PsAffx.CL294Contig1_atAt5g17710--2e+0At3g14290PAE2O.I.H.G.S.X.
0.5374.2PsAffx.CL13Contig1_atAt5g17710--7e-2At5g4004060S acidic ribosomal protein P2 (RPP2E)O.I.H.G.S.X.
0.5374.2PsAffx.CL74Contig1_atAt5g17710--4e-16At4g38740ROC1 (ROTAMASE CYP 1)O.I.H.G.S.X.
0.5374.2PsAffx.CL221Contig1_atAt5g17710--2e+0At5g24460unknown proteinO.I.H.G.S.X.
0.5273.1PsAffx.CL404Contig1_atAt5g17710--6e-3At2g47470UNE5 (UNFERTILIZED EMBRYO SAC 5)O.I.H.G.S.X.
0.5273.1PsAffx.CL569Contig1_atAt5g17710--1e-4At5g40580PBB2O.I.H.G.S.X.
0.5273.1PsAffx.CL268Contig1_atAt5g17710--6e-9At5g10980histone H3O.I.H.G.S.X.
0.4968.3PsAffx.CL210Contig1_s_atAt5g17710--5e+0At3g47490HNH endonuclease domain-containing proteinO.I.H.G.S.X.
0.4867.7PsAffx.C65000037_s_atAt5g17710--9e-10At5g08680ATP synthase beta chain, mitochondrial, putativeO.I.H.G.S.X.
0.4867.7PsAffx.CL176Contig1_s_atAt5g17710--4e+0At3g07430emb1990 (embryo defective 1990)O.I.H.G.S.X.
0.4766.6PsAffx.CL175Contig1_atAt5g17710--2e+0At1g49150unknown proteinO.I.H.G.S.X.
0.4665.5PsAffx.CL136Contig1_atAt5g17710--2e+0At1g28580GDSL-motif lipase, putativeO.I.H.G.S.X.
0.4259.3PsAffx.CL2Contig12_atAt5g17710--8e-1At2g42280basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.4057.1PsAffx.CL321Contig1_atAt5g17710--7e+0At2g05510glycine-rich proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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