Co-expression analysis

Gene ID Zm.18284.1.A1_at
Gene name hypothetical protein LOC100191290
Homology with ArabidopsisSimilar to At5g11830: - (HF=5e+0)
Module size 8 genes
NF 0.15
%ile 9.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7490.30.95Zm.18284.1.A1_atBG873939hypothetical protein LOC100191290-5e+0At5g11830-O.I.H.G.S.X.
0.4048.50.95Zm.19344.1.A1_atCO530680--3e-2At2g48075unknown proteinO.I.H.G.S.X.
0.2928.10.96Zm.2739.1.A1_atAW067034--3e+0At5g48655zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2521.30.95Zm.4108.1.S1_atAI834735hypothetical protein LOC100193257-2e-7At3g47610transcription regulator/ zinc ion bindingO.I.H.G.S.X.
0.158.60.96Zm.15083.2.A1_atAY107613.1hypothetical protein LOC100276197-6e-4At3g56240CCH (COPPER CHAPERONE)O.I.H.G.S.X.
0.147.70.96Zm.2711.1.S1_atAW066958Hypothetical protein LOC100216734-4e+0At5g28288-O.I.H.G.S.X.
0.094.00.96Zm.13744.1.S1_atAY106035.1guanine nucleotide-binding protein alpha-1 subunit-2e-14At2g26300GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1)O.I.H.G.S.X.
0.051.90.95Zm.16804.1.S1_atCK37059550S ribosomal protein L17-2e-6At5g09770ribosomal protein L17 family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.298.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.398.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.097.7GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.797.2GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.597.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.196.8GSM320438protocol: mRNA - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.996.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.896.6GSM320439protocol: mRNA - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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