Co-expression analysis

Gene ID Zm.1826.1.A1_at
Gene name nitrate reductase
Homology with ArabidopsisSimilar to At1g37130: NIA2 (NITRATE REDUCTASE 2) (HF=8e-21)
Module size 6 genes
NF 0.03
%ile 1.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7792.10.85Zm.1826.1.A1_atAW461127nitrate reductase-8e-21At1g37130NIA2 (NITRATE REDUCTASE 2)O.I.H.G.S.X.
0.5065.70.91Zm.4.2.A1_atCA401225--2e-3At5g11860NLI interacting factor (NIF) family proteinO.I.H.G.S.X.
0.136.80.87Zm.5436.1.A1_atAI833498--3e+0At3g06470GNS1/SUR4 membrane family proteinO.I.H.G.S.X.
0.041.50.87Zm.10115.1.S1_x_atCF626396early response to dehydration 15-like protein-2e+0At1g62240unknown proteinO.I.H.G.S.X.
0.020.70.89ZmAffx.1083.1.S1_atAI974922--1e+0At1g59830PP2A-1O.I.H.G.S.X.
0.010.30.90Zm.3982.1.A1_atAW14668450S ribosomal protein L21-2e-3At1g3568050S ribosomal protein L21, chloroplast / CL21 (RPL21)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.998.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.698.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.598.7GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.298.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.398.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.298.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.798.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.896.6GSM320459protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g37130, orthologous to the query gene, Zm.1826.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At1g37130840630NIA2 (NITRATE REDUCTASE 2)Identified as a mutant resistant to chlorate. Encodes nitrate reductase structural gene. Involved in nitrate assimilation. Has nitrate reductase activity. Up-regulated by the fungus P. indica. Binds transcription factor At2g35940.O.I.H.G.S.X.
0.4457.2At3g61440825317CYSC1 (CYSTEINE SYNTHASE C1)Encodes a cysteine synthase isomer CysC1. The isomer is however less effective in cysteine biosynthesis. It is involved in beta-cyanoalanine biosynthesis, an intermediate of cyanide detoxification pathway.O.I.H.G.S.X.
0.3338.1At3g17650821032YSL5 (YELLOW STRIPE LIKE 5)Arabidopsis thaliana metal-nicotianamine transporter YSL5O.I.H.G.S.X.
0.3133.8At4g04040825716MEE51 (maternal effect embryo arrest 51)F:diphosphate-fructose-6-phosphate 1-phosphotransferase activity;P:embryonic development ending in seed dormancy, glycolysis;C:pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex;BOPMFAVO.I.H.G.S.X.
0.3133.8At5g04590830336SIRA.thaliana gene encoding sulfite reductase.O.I.H.G.S.X.
0.3032.1At5g42390834245metalloendopeptidaseF:metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding;P:proteolysis;C:mitochondrion, chloroplast stroma, chloroplast;BOMFPAVO.I.H.G.S.X.
0.2830.3At3g54360824603protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;MBOPAFVO.I.H.G.S.X.
0.2830.3At2g23420816874NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2)F:nicotinate phosphoribosyltransferase activity;P:pyridine nucleotide biosynthetic process, nicotinate nucleotide salvage;C:cellular_component unknown;BMOAPFO.I.H.G.S.X.
0.2624.4At2g43750818978OASB (O-ACETYLSERINE (THIOL) LYASE B)Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasB, the key enzyme for fixation of inorganic sulfide. It catalyzes the formation of cysteine from O-acetylserine and inorganic sulfide.O.I.H.G.S.X.
0.2522.6At1g58080842175ATATP-PRT1 (ATP PHOSPHORIBOSYL TRANSFERASE 1)ATP phosphoribosyl transferase, catalyses first step of histidine biosynthesisO.I.H.G.S.X.
0.2522.6At1g19350838518BES1 (BRI1-EMS-SUPPRESSOR 1)Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS), followed by a highly conserved amino-terminal domain (N) shared by all family members, a BIN2 phosphorylation domain (P), a PEST motif, involved in protein degradation in the absence of BR, and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genesO.I.H.G.S.X.
0.2522.6At1g48030841221mtLPD1 (mitochondrial lipoamide dehydrogenase 1)Encodes a mitochondrial lipoamide dehydrogenase whose expression is induced by light.O.I.H.G.S.X.
0.2522.6At5g12860831126DiT1 (dicarboxylate transporter 1)F:oxoglutarate:malate antiporter activity;P:N-terminal protein myristoylation, malate transport, response to nematode;C:mitochondrion, chloroplast, plastid, membrane, chloroplast envelope;BOMPAFVO.I.H.G.S.X.
0.2420.7At4g25130828616peptide methionine sulfoxide reductase, putativeF:peptide-methionine-(S)-S-oxide reductase activity, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor;P:protein modification process, protein metabolic process;C:chloroplast stroma, chloroplast;OBMPFAVO.I.H.G.S.X.
0.2420.7At2g14910815980unknown proteinF:unknown;P:unknown;C:chloroplast;BOPMO.I.H.G.S.X.
0.2319.3At4g34350829585HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)Arabidopsis ISPH is involved in the plastid nonmevalonate pathway of isoprenoid biosynthesis. It was shown to complement the lethal phenotype of E. coli ispH mutant and is therefore most likely encodes a protein with 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity involved in the last step of mevalonate-independent isopentenyl biosynthesis. Mutant has Albino seedling.O.I.H.G.S.X.
0.2217.5At3g60750825246transketolase, putativeF:catalytic activity, transketolase activity;P:response to cadmium ion, response to salt stress;C:chloroplast stroma, chloroplast, chloroplast envelope;OBMFAPO.I.H.G.S.X.
0.2115.8At5g06340830522ATNUDX27 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 27)F:bis(5'-adenosyl)-pentaphosphatase activity, bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity;P:biological_process unknown;C:chloroplast;OBPMAO.I.H.G.S.X.
0.2115.8At5g66200836752ARO2 (ARMADILLO REPEAT ONLY 2)Armadillo repeat protein. One of a family of four in Arabidopsis. Expressed in vegetative tissues, anthers and ovules.O.I.H.G.S.X.
0.2115.8At1g32500840144ATNAP6 (NON-INTRINSIC ABC PROTEIN 6)Encodes a member of a heterogenous group of non-intrinsic ATP-binding cassette (ABC) proteins. Members of this group bear no close resemblance to each other nor to representatives of specific ABC protein subfamilies from other organisms. This grouping is arbitrary and will likely change upon acquisition of further data.O.I.H.G.S.X.
0.2014.4At3g63520825527CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1)Encodes a protein with 9-cis-epoxycarotenoid dioxygenase activity. The enzyme was shown to act on a variety of carotenoid including β-carotene, lutein, zeaxanthin, and all-trans-violaxanthin. When those compounds are used as substrates, the major reaction product detected is a C14 dialdehyde: 4,9-dimethyldodeca-2,4,6,8,10-pentaene-1,12-dial. The enzyme did not cleave as efficiently carotenoids containing 9-cis-double or allenic bonds.O.I.H.G.S.X.
0.2014.4At5g51020835175CRL (CRUMPLED LEAF)Encodes CRL (CRUMPLED LEAF), a protein localized in the outer envelope membrane of plastids. Mutation in this gene affects the pattern of cell division, cell differentiation and plastid division.O.I.H.G.S.X.
0.2014.4At2g21170816652TIM (TRIOSEPHOSPHATE ISOMERASE)Encodes triosephosphate isomerase.O.I.H.G.S.X.
0.2014.4At5g06130830500chaperone protein dnaJ-relatedF:unknown;P:unknown;C:unknown;PBOO.I.H.G.S.X.
0.2014.4At2g26080817149AtGLDP2 (Arabidopsis thaliana glycine decarboxylase P-protein 2)F:glycine dehydrogenase (decarboxylating) activity, ATP binding;P:glycine decarboxylation via glycine cleavage system, glycine metabolic process;C:mitochondrion, glycine cleavage complex, chloroplast, chloroplast envelope;OBFAMPO.I.H.G.S.X.
0.1912.7At1g36320840539unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.H.G.S.X.
0.1912.7At4g08280826382-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPFO.I.H.G.S.X.
0.1912.7At4g15545827228unknown proteinF:unknown;P:unknown;C:unknown;MOBPFVO.I.H.G.S.X.
0.1912.7At5g50920835165CLPC1Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.O.I.H.G.S.X.
0.1811.4At1g01540839533protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.H.G.S.X.
0.1811.4At3g54660824631GR (GLUTATHIONE REDUCTASE)Encodes glutathione reductase that is most likely localized in the chloroplast.O.I.H.G.S.X.
0.1811.4At3g10670820236ATNAP7Plastidic SufC-like ATP-binding cassette/ATPase essential for Arabidopsis embryogenesis. Involved in the biogenesis and/or repair of oxidatively damaged FeS clusters. Expressed in embryos and meristems.O.I.H.G.S.X.
0.1811.4At3g10230820185LYC (LYCOPENE CYCLASE)Encodes a protein with lycopene β-cyclase activity. This enzyme uses the linear, symmetrical lycopene as substrate. However, unlike the ε-cyclase which adds only one ring, the β-cyclase introduces a ring at both ends of lycopene to form the bicyclic β-carotene.O.I.H.G.S.X.
0.1811.4At5g49940835057NFU2 (NIFU-LIKE PROTEIN 2)Encodes a protein containing the NFU domain and functions as a molecular scaffold for iron-sulfur cluster assembly and delivery. Homologous to the cyanobacterial CNFU protein and is targeted to the chloroplast.O.I.H.G.S.X.
0.168.8At1g27510839642-F:unknown;P:response to singlet oxygen;C:thylakoid membrane;PMOFBO.I.H.G.S.X.
0.168.8At5g04550830334unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO.I.H.G.S.X.
0.168.8At4g35760829729-F:unknown;P:unknown;C:chloroplast;OBPO.I.H.G.S.X.
0.168.8At5g60750836196CAAX amino terminal protease family proteinF:endopeptidase activity;P:proteolysis;C:chloroplast, membrane;BOPAO.I.H.G.S.X.
0.157.8At5g07370830628IPK2a (INOSITOL POLYPHOSPHATE KINASE 2 ALPHA)Encodes inositol polyphosphate kinase, which phosphorylates inositol 1,4,5-triphosphate and inositol 1,3,4,5-tetrakisphosphate to generate inositol 1,3,4,5,6-pentakisphosphateO.I.H.G.S.X.
0.157.8At5g59750836096riboflavin biosynthesis protein, putativeF:3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity;P:riboflavin biosynthetic process;C:chloroplast;BOFAPO.I.H.G.S.X.
0.146.8At4g30950829220FAD6 (FATTY ACID DESATURASE 6)Chloroplastic enzyme responsible for the synthesis of 16:2 and 18:2 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. Gene mutation resulted in reduced level of unsaturated fatty acids leading to susceptibility to photoinhibition.O.I.H.G.S.X.
0.146.8At4g14880827145OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)Encodes a cytosolic isoform of cytosolic O-acetylserine(thiol)lyase, a key enzyme in cysteine biosynthesis and for the fixation of inorganic sulfide. It catalyzes the formation of cysteine from O-acetylserine and inorganic sulfide. Gene expression is predominant in the root cortex and the xylem parenchyma. Gene expression is induced in leave, stems and roots by high salt and heavy metal stresses, mediated by ABA.O.I.H.G.S.X.
0.135.8At1g78900844228VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)Encodes catalytic subunit A of the vacuolar ATP synthase. Mutants are devoid of vacuolar ATPase activity as subunit A is encoded only by this gene and show strong defects in male gametophyte development and in Golgi stack morphology.O.I.H.G.S.X.
0.135.8At1g23310838940GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE)Identified by cloning the gene that corresponded to a purified protein having glyoxylate aminotransferase activity. Localized to the peroxisome and thought to be involved in photorespiration/ metabolic salvage pathway.O.I.H.G.S.X.
0.135.8At1g79870844326oxidoreductase family proteinF:in 6 functions;P:metabolic process;C:unknown;BOFMPAVO.I.H.G.S.X.
0.135.8At2g25800817122-F:unknown;P:biological_process unknown;C:unknown;POMFBO.I.H.G.S.X.
0.135.8At3g01120821292MTO1 (METHIONINE OVERACCUMULATION 1)encodes a cystathionine gamma-synthase, which performs the first committed step in methionine biosynthesis. A conserved motif of 13 amino acids in the first exon is required for posttranscriptional autoregulation. This enzyme shares the same substrate as threonine synthase (TS) and its absence transcriptionally affects 8 genes in the genome.O.I.H.G.S.X.
0.135.8At5g35630833535GS2 (GLUTAMINE SYNTHETASE 2)chloroplastic glutamine synthetaseO.I.H.G.S.X.
0.135.8At3g02470821214SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE)Encodes a S-adenosylmethionine decarboxylase involved in polyamine biosynthesis.O.I.H.G.S.X.
0.135.8At1g65260842833PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4)F:unknown;P:biological_process unknown;C:in 8 components;BOMVFPAO.I.H.G.S.X.
0.124.9At3g56840824851FAD-dependent oxidoreductase family proteinF:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOMFAPVO.I.H.G.S.X.
0.114.1At5g02480831883-F:unknown;P:unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.114.1At3g46510823804PUB13 (PLANT U-BOX 13)Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.O.I.H.G.S.X.
0.114.1At1g13440837904GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)F:NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity;P:response to oxidative stress, response to cadmium ion, gluconeogenesis, defense response to bacterium, glycolysis;C:in 8 components;BOPFMAO.I.H.G.S.X.
0.114.1At3g55960824762NLI interacting factor (NIF) family proteinF:phosphatase activity;P:biological_process unknown;C:unknown;MOFPO.I.H.G.S.X.
0.103.4At4g24020828502NLP7 (NIN LIKE PROTEIN 7)Encodes NIN Like Protein 7 (NLP7). Modulates nitrate sensing and metabolism. Mutants of NLP7 show features of nitrogen-starved plants and are tolerant to drought stress. Localized in the nucleus and functions as a putative transcription factor.O.I.H.G.S.X.
0.103.4At4g20360827784ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B)F:GTP binding, translation elongation factor activity, GTPase activity;P:peptidyl-cysteine S-nitrosylation;C:in 9 components;BOMFPAVO.I.H.G.S.X.
0.103.4At3g42050823170vacuolar ATP synthase subunit H family proteinF:binding, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:vacuolar membrane, chloroplast, plasma membrane, vacuole, plant-type vacuole;MFOPO.I.H.G.S.X.
0.103.4At4g03260828003leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVAO.I.H.G.S.X.
0.092.8At3g27090822327-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMBO.I.H.G.S.X.
0.082.3At2g18960816413AHA1 (ARABIDOPSIS H+ ATPASE 1)Encodes a plasma membrane proton ATPase. Mutants have a reduced ability to close their stomata in response to drought and are affected in stomatal but not seed responsiveness to ABA.O.I.H.G.S.X.
0.071.9At1g06390837150GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1)encodes a GSK3/shaggy-like protein kinase. Gene expression is induced by NaCl and ABA but not KCl, suggesting that this gene may be involved in response to osmotic stress. This protein can interact with the BZR1 protein involved in brassinosteroid-mediated signaling in a Y2H assay and promotes BZR1 phosphorylation in protoplasts.O.I.H.G.S.X.
0.071.9At5g60410836163SIZ1Encodes a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis. Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation.O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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