Co-expression analysis

Gene ID	Zm.18148.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g21320: zinc finger (B-box type) family protein (HF=5e+0)
Module size	28 genes
NF	0.28
%ile	25.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.8	0.92	Zm.18148.1.A1_at	CN844779	-	-	5e+0	At2g21320	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.95	Zm.186.1.S1_at	X71396.1	Bowman-Birk type wound-induced proteinase inhibitor WIP1	-	1e+0	At1g20000	TAF11b (TBP-ASSOCIATED FACTOR 11b)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.93	Zm.12546.2.A1_at	AI770557	-	-	3e+0	At5g56150	UBC30 (ubiquitin-conjugating enzyme 30)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.95	Zm.12208.1.A1_at	BM736144	-	-	3e-4	At3g14630	CYP72A9	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.94	Zm.17510.1.A1_at	CK144409	hypothetical protein LOC100217109	-	6e-22	At1g08970	NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9)	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.95	Zm.3321.1.A1_a_at	AI629966	vacuolar sorting receptor homolog	-	2e-4	At2g14740	ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.94	Zm.4573.1.A1_at	BM340312	hypothetical protein LOC100273245	-	4e-1	At1g02350	protoporphyrinogen oxidase-related	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.95	Zm.17562.1.S1_at	CF040421	hypothetical protein LOC100280253	-	5e+0	At1g48330	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.95	Zm.2895.7.A1_at	BQ164476	hypothetical protein LOC100275739	-	5e-18	At2g40205	60S ribosomal protein L41 (RPL41C)	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.96	Zm.2541.1.A1_at	CF629797	cortical cell-delineating protein	-	2e+0	At1g12090	ELP (EXTENSIN-LIKE PROTEIN)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.96	Zm.2713.2.A1_at	AI881541	-	-	1e-30	At5g60790	ATGCN1	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.95	Zm.2780.1.A1_at	CF057723	hypothetical protein LOC100278371	-	4e-1	At1g14270	CAAX amino terminal protease family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.96	Zm.11806.1.S1_at	BM380898	thylakoid lumenal 16.5 kDa protein	-	6e+0	At5g42146	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.96	Zm.7068.1.A1_at	CD433030	hypothetical protein LOC100192654	-	1e-18	At3g23800	SBP3 (selenium-binding protein 3)	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.96	Zm.6131.1.S1_at	AY105213.1	hypothetical protein LOC100191528	-	7e-1	At1g74560	NRP1 (NAP1-RELATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.95	Zm.5251.1.A1_at	CD982303	hypothetical protein LOC100273610	-	3e-15	At4g20980	eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.96	Zm.5095.1.S1_s_at	BM269118	hypothetical protein LOC100192930	-	2e+0	At4g16447	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.96	Zm.5196.1.A1_at	BM334572	PHD-finger family protein	-	1e+0	At2g24430	ANAC038 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 38)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.97	Zm.810.1.S1_at	CF006379	-	-	6e-69	At5g45550	mob1/phocein family protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.96	Zm.17403.1.A1_at	CK144920	transposon protein Pong sub-class	-	2e+0	At3g63030	MBD4	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.95	Zm.6321.1.A1_at	AI691388	-	-	2e-1	At3g17440	NPSN13 (NOVEL PLANT SNARE 13)	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.97	Zm.1788.1.A1_at	AW447831	amino acid transporter-like protein	-	7e-5	At5g38820	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.95	Zm.292.1.S1_at	L46397.1	MADS box protein	-	2e-7	At3g61120	AGL13 (AGAMOUS-LIKE 13)	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.95	Zm.6763.3.S1_at	AY105013.1	-	-	1e+0	At3g59845	NADP-dependent oxidoreductase, putative	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.95	Zm.12624.1.S1_at	BU051522	-	-	5e+0	At4g03298	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.97	Zm.4164.1.A1_x_at	BM079246	-	-	5e+0	At3g01860	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.97	Zm.4209.1.A1_at	CA405195	hypothetical protein LOC100191198	-	2e-5	At5g37370	ATSRL1	O.I.	H.G.	S.X.	Please select
0.12	5.9	0.98	Zm.13427.1.S1_at	AF124738.1	hypothetical protein LOC100194389	-	1e-7	At4g21520	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.8	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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