Co-expression analysis

Gene ID	Zm.1811.1.A1_a_at
Gene name	hypothetical protein LOC100272984
Homology with Arabidopsis	Similar to At1g48850: EMB1144 (embryo defective 1144) (HF=3e+0)
Module size	21 genes
NF	0.32
%ile	31.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	92.8	0.90	Zm.1811.1.A1_a_at	AY105171.1	hypothetical protein LOC100272984	-	3e+0	At1g48850	EMB1144 (embryo defective 1144)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.93	Zm.16454.1.S1_at	CF349076	hypothetical protein LOC100272380	-	2e-4	At2g02370	-	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.94	Zm.5048.4.A1_at	AY110862.1	Hypothetical protein LOC100192937	-	6e+0	At5g54850	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.95	Zm.803.1.A1_at	CF625813	hypothetical protein LOC100274731	-	6e-1	At5g25210	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.92	Zm.17597.1.A1_at	BM349649	ATP synthase3	-	3e-2	At5g47030	ATP synthase delta' chain, mitochondrial	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.91	Zm.8787.1.A1_at	CB350639	-	-	3e-1	At3g01170	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.92	Zm.10774.1.A1_a_at	CD972574	hypothetical protein LOC100193506	-	6e-1	At5g14240	-	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.94	Zm.5707.1.S1_at	CF631594	copper chaperone	-	3e-2	At1g66240	ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1)	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.93	Zm.5080.1.A1_at	AI600750	-	-	5e+0	At2g30032	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.94	Zm.19147.2.S1_x_at	AY112227.1	-	-	2e+0	At1g59833	-	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.93	Zm.1028.1.S1_at	BM380738	hypothetical protein LOC100274540	-	1e-15	At3g21690	MATE efflux family protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.92	Zm.2550.1.S1_at	CF632382	cinnamoyl CoA reductase1	-	2e-1	At1g80820	CCR2 (CINNAMOYL COA REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.94	Zm.8285.1.S1_at	CA826983	hypothetical protein LOC100276185	-	6e-3	At4g10810	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.92	Zm.6066.1.A1_at	CF635836	-	-	2e-1	At1g30690	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.94	Zm.5378.1.A1_at	CA404486	-	-	1e-39	At4g26720	PPX1 (PROTEIN PHOSPHATASE X 1)	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.94	Zm.7056.12.S1_at	AI746152	-	-	2e-1	At5g39740	60S ribosomal protein L5 (RPL5B)	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.95	Zm.3565.1.A1_at	AW042565	-	-	5e-13	At1g54590	splicing factor Prp18 family protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.94	Zm.17967.1.A1_at	CK827121	-	-	3e-5	At4g09520	catalytic/ metal ion binding / phosphoglycerate mutase	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.92	Zm.122.1.S1_at	AY105634.1	malate dehydrogenase6	-	9e-13	At5g58330	malate dehydrogenase (NADP), chloroplast, putative	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.96	Zm.5412.1.A1_at	CF635537	hypothetical protein LOC100280167	-	3e-6	At4g02630	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.09	4.0	0.96	Zm.8556.1.A1_at	BM332382	hypothetical protein LOC100274130	-	6e+0	At5g62290	nucleotide-sensitive chloride conductance regulator (ICln) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.8	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7	93.2	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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