Co-expression analysis

Gene ID	Zm.18107.1.S1_a_at
Gene name	meg5 protein
Homology with Arabidopsis	Similar to At5g22190: unknown protein (HF=3e-1)
Module size	6 genes
NF	0.57
%ile	76.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	81.1	0.98	Zm.18107.1.S1_a_at	AY536125.1	meg5 protein	-	3e-1	At5g22190	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.99	ZmAffx.116.1.A1_at	AI665610	-	-	3e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.98	Zm.6556.1.A1_at	AY109683.1	hypothetical protein LOC100273410	-	7e-19	At2g34160	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.3792.1.S1_at	CA826763	hypothetical protein LOC100276631	-	9e-2	At2g45450	ZPR1 (LITTLE ZIPPER 1)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.99	Zm.2688.2.A1_a_at	CK986048	hypothetical protein LOC100273855	-	5e+0	At3g25120	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.99	Zm.14073.1.S1_s_at	CD995440	60S ribosomal protein L28	-	8e-9	At2g19730	60S ribosomal protein L28 (RPL28A)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.5	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM205367	Mo17xB73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
7.1	97.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, Ta.2319.3.S1_a_at, orthologous to the query gene, Zm.18107.1.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.0	Ta.2319.3.S1_a_at	At5g22190	-	-	4e-3	At1g21320	nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please select
0.53	74.9	Ta.7748.1.A1_a_at	At5g22190	-	-	5e+0	At4g04090	speckle-type POZ protein-related	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.6358.1.S1_at	At5g22190	-	-	3e-5	At2g27100	SE (SERRATE)	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.890.2.A1_a_at	At5g22190	-	-	1e+0	At1g16560	Per1-like family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.2965.2.S1_x_at	At5g22190	-	-	8e+0	Atmg01030	-	O.I.	H.G.	S.X.	Please select
0.14	15.8	Ta.23445.1.S1_at	At5g22190	-	-	1e+0	At3g25150	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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