Co-expression analysis

Gene ID Zm.18107.1.S1_a_at
Gene name meg5 protein
Homology with ArabidopsisSimilar to At5g22190: unknown protein (HF=3e-1)
Module size 6 genes
NF 0.57
%ile 76.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6381.10.98Zm.18107.1.S1_a_atAY536125.1meg5 protein-3e-1At5g22190unknown proteinO.I.H.G.S.X.
0.7792.10.99ZmAffx.116.1.A1_atAI665610--3e+0At5g4770060S acidic ribosomal protein P1 (RPP1C)O.I.H.G.S.X.
0.7389.90.98Zm.6556.1.A1_atAY109683.1hypothetical protein LOC100273410-7e-19At2g34160nucleic acid bindingO.I.H.G.S.X.
0.5065.70.98Zm.3792.1.S1_atCA826763hypothetical protein LOC100276631-9e-2At2g45450ZPR1 (LITTLE ZIPPER 1)O.I.H.G.S.X.
0.4455.70.99Zm.2688.2.A1_a_atCK986048hypothetical protein LOC100273855-5e+0At3g25120mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinO.I.H.G.S.X.
0.2216.90.99Zm.14073.1.S1_s_atCD99544060S ribosomal protein L28-8e-9At2g1973060S ribosomal protein L28 (RPL28A)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.598.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.398.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.898.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.598.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.498.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM205367Mo17xB73 13 DAP endosperm tissue biological replicate 1GSE8275Non-additive and imprinted gene expression in hybrid maize endosperm_13DAPLink to GEO
7.197.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.44208.1.A1_at, orthologous to the query gene, Zm.18107.1.S1_a_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6791.1PtpAffx.44208.1.A1_atAt5g22190hypothetical protein-4e-1At2g41940ZFP8 (ZINC FINGER PROTEIN 8)O.I.H.G.S.X.
0.5582.2PtpAffx.26561.1.A1_atAt5g22190hypothetical protein-2e+0At4g04601unknown proteinO.I.H.G.S.X.
0.4774.6PtpAffx.7190.1.A1_atAt5g22190hypothetical protein-3e-30At3g19910zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4268.6PtpAffx.204814.1.S1_x_atAt5g22190hypothetical protein-4e-49At2g26800hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putativeO.I.H.G.S.X.
0.3661.6PtpAffx.44545.1.A1_atAt5g22190f-box family protein-2e+0At2g33030AtRLP25 (Receptor Like Protein 25)O.I.H.G.S.X.
0.3357.5PtpAffx.10711.1.S1_atAt5g22190hypothetical protein-1e-4At3g25870unknown proteinO.I.H.G.S.X.
0.2441.8PtpAffx.207891.1.S1_atAt5g22190--2e-45At1g13860dehydration-responsive protein-relatedO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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