CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.18107.1.S1_a_at

Gene name meg5 protein
Homology with Arabidopsis Similar to At5g22190: unknown protein (HF=3e-1)

Module size 6 genes

NF 0.57

%ile 76.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 81.1 0.98 Zm.18107.1.S1_a_at AY536125.1 meg5 protein - 3e-1 At5g22190 unknown protein O.I. H.G. S.X.
0.77 92.1 0.99 ZmAffx.116.1.A1_at AI665610 - - 3e+0 At5g47700 60S acidic ribosomal protein P1 (RPP1C) O.I. H.G. S.X.
0.73 89.9 0.98 Zm.6556.1.A1_at AY109683.1 hypothetical protein LOC100273410 - 7e-19 At2g34160 nucleic acid binding O.I. H.G. S.X.
0.50 65.7 0.98 Zm.3792.1.S1_at CA826763 hypothetical protein LOC100276631 - 9e-2 At2g45450 ZPR1 (LITTLE ZIPPER 1) O.I. H.G. S.X.
0.44 55.7 0.99 Zm.2688.2.A1_a_at CK986048 hypothetical protein LOC100273855 - 5e+0 At3g25120 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein O.I. H.G. S.X.
0.22 16.9 0.99 Zm.14073.1.S1_s_at CD995440 60S ribosomal protein L28 - 8e-9 At2g19730 60S ribosomal protein L28 (RPL28A) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.5 98.8 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3 98.7 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8 98.3 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5 98.3 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2 98.2 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5 98.1 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4 98.1 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3 98.0 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2 97.8 GSM205367 Mo17xB73 13 DAP endosperm tissue biological replicate 1 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
7.1 97.7 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.37897.1.A1_at, orthologous to the query gene, Zm.18107.1.S1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.65 83.8 GmaAffx.37897.1.A1_at At5g22190 - - 4e+0 At5g30341 unknown protein O.I. H.G. S.X.
0.40 57.1 Gma.1445.1.S1_at At5g22190 - - 6e-7 At1g15950 CCR1 (CINNAMOYL COA REDUCTASE 1) O.I. H.G. S.X.
0.36 50.8 Gma.1190.1.S1_at At5g22190 4-coumarate:coenzyme A ligase - 1e-3 At1g51680 4CL1 (4-COUMARATE:COA LIGASE 1) O.I. H.G. S.X.
0.33 46.1 Gma.3881.2.S1_x_at At5g22190 - - 4e-29 At2g30490 C4H (CINNAMATE-4-HYDROXYLASE) O.I. H.G. S.X.
0.30 40.4 Gma.3881.2.S1_at At5g22190 - - 4e-29 At2g30490 C4H (CINNAMATE-4-HYDROXYLASE) O.I. H.G. S.X.
0.29 39.0 Gma.6442.1.S1_at At5g22190 - - 2e-3 At1g52760 esterase/lipase/thioesterase family protein O.I. H.G. S.X.
0.27 35.7 Gma.1445.3.S1_a_at At5g22190 - - 9e-10 At1g15950 CCR1 (CINNAMOYL COA REDUCTASE 1) O.I. H.G. S.X.
0.20 25.1 Gma.5947.1.S1_s_at At5g22190 - - 1e-1 At1g30060 COP1-interacting protein-related O.I. H.G. S.X.
0.19 23.7 GmaAffx.77359.1.S1_s_at At5g22190 - - 8e-1 At3g52110 unknown protein O.I. H.G. S.X.
0.19 23.7 GmaAffx.82427.1.S1_at At5g22190 - - 9e-4 At3g48950 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein O.I. H.G. S.X.
0.19 23.7 Gma.5165.1.S1_at At5g22190 - - 9e-3 At1g03210 phenazine biosynthesis PhzC/PhzF family protein O.I. H.G. S.X.
0.18 22.3 Gma.4360.1.S1_s_at At5g22190 - - 3e-28 At1g76690 OPR2 O.I. H.G. S.X.
0.18 22.3 GmaAffx.37994.1.A1_at At5g22190 - - 4e-7 At1g19380 unknown protein O.I. H.G. S.X.
0.12 15.1 GmaAffx.75390.1.S1_at At5g22190 - - 3e-1 At5g07475 plastocyanin-like domain-containing protein O.I. H.G. S.X.
0.12 15.1 GmaAffx.90932.1.S1_s_at At5g22190 - - 9e-46 At3g60750 transketolase, putative O.I. H.G. S.X.
0.05 8.0 GmaAffx.17756.1.S1_at At5g22190 - - 9e-6 At5g18890 inosine-uridine preferring nucleoside hydrolase family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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