Co-expression analysis

Gene ID Zm.18101.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g36020: CSDP1 (cold shock domain protein 1) (HF=5e+0)
Module size 8 genes
NF 0.53
%ile 69.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6785.80.88Zm.18101.1.S1_atCA827356--5e+0At4g36020CSDP1 (cold shock domain protein 1)O.I.H.G.S.X.
0.5775.10.94Zm.13136.1.A1_atCA404810hypothetical protein LOC100191921-4e+0At4g32900aminoacyl-tRNA hydrolaseO.I.H.G.S.X.
0.5571.60.94ZmAffx.1405.1.S1_at40794996-80--0Atmg00510-O.I.H.G.S.X.
0.5369.10.93Zm.13055.2.S1_atCA403909nuclear transcription factor Y subunit B-3-6e-19At4g14540NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)O.I.H.G.S.X.
0.4455.70.92Zm.3876.1.S1_atAY111960.1hypothetical protein LOC100278092-5e+0At4g17030ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1)O.I.H.G.S.X.
0.4048.50.92Zm.14940.1.S1_atBM074436hypothetical protein LOC100192835-5e-22At2g2045060S ribosomal protein L14 (RPL14A)O.I.H.G.S.X.
0.4048.50.92Zm.13190.1.A1_atCD433968--2e-1At3g23830GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4)O.I.H.G.S.X.
0.3641.30.91Zm.14944.1.A1_atCB334702--1e+0At5g27020unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.599.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
18.199.2GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.298.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.698.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.798.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.698.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.998.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.698.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.698.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.993.8GSM320456protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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