Co-expression analysis

Gene ID Zm.18099.1.A1_at
Gene name hypothetical protein LOC100216597
Homology with ArabidopsisSimilar to At5g48560: basic helix-loop-helix (bHLH) family protein (HF=2e-3)
Module size 6 genes
NF 0.62
%ile 83.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.98Zm.18099.1.A1_atCF631457hypothetical protein LOC100216597-2e-3At5g48560basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.7188.20.98ZmAffx.212.1.A1_atAI670220--3e+0At5g21010ATBPM5 (BTB-POZ and MATH domain 5)O.I.H.G.S.X.
0.5369.10.98Zm.17441.1.A1_atBM268338--5e-1At5g06910ATJ6 (Arabidopsis J-domain protein 6)O.I.H.G.S.X.
0.5369.10.99ZmAffx.392.1.S1_atAI676820--1e+1At2g31035-O.I.H.G.S.X.
0.5065.70.98Zm.5051.1.A1_atAI600543nucleotide binding protein-5e+0At5g09990PROPEP5 (Elicitor peptide 5 precursor)O.I.H.G.S.X.
0.3131.60.98ZmAffx.1213.1.A1_atBU051439--2e-1At3g10190calmodulin, putativeO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8395.60.98Zm.4021.1.A1_atAW231310hypothetical protein LOC100217057-7e-1At5g62610basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.7389.90.98Zm.6483.1.A1_atAI692073--5e-1At3g12650unknown proteinO.I.H.G.S.X.
0.6785.80.97Zm.2626.1.A1_atAY112337.1hypothetical protein LOC100193977-3e-1At5g47090unknown proteinO.I.H.G.S.X.
0.6381.10.98Zm.3520.1.A2_atBM078576--1e-94At4g40040histone H3.2O.I.H.G.S.X.
0.6381.10.96ZmAffx.406.11.S1_atAI676834--3e+0At1g57630disease resistance protein (TIR class), putativeO.I.H.G.S.X.
0.6381.10.98ZmAffx.825.1.A1_atAI770513--5e-2At3g06455splicing factor-relatedO.I.H.G.S.X.
0.6179.50.98Zm.8863.1.S1_atBM332217--2e-7At2g03280unknown proteinO.I.H.G.S.X.
0.6077.80.98Zm.17358.1.A1_atCF624129PTD008 protein /// PTD008 protein-1e-1At3g09770zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6077.80.98Zm.18103.1.S1_atAY187878.1nitrate transporter-3e-3At1g59740proton-dependent oligopeptide transport (POT) family proteinO.I.H.G.S.X.
0.5674.40.96Zm.3733.1.S1_atBE510499peptidyl-prolyl isomerase CWC27-1e-3At4g33060peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinO.I.H.G.S.X.
0.5571.60.95Zm.17290.1.S1_atAY106567.1--1e+0At1g67455F-box family proteinO.I.H.G.S.X.
0.5571.60.97Zm.31.2.S1_a_atAY109335.1hypothetical protein LOC100192600-1e-90At5g0296040S ribosomal protein S23 (RPS23B)O.I.H.G.S.X.
0.5369.10.97Zm.3442.1.A1_atAY103732.1hypothetical protein LOC100273117-9e-9At1g06680PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1)O.I.H.G.S.X.
0.5369.10.97Zm.2365.2.S1_atAI739988hypothetical protein LOC100216757-1e-14At1g64040TOPP3O.I.H.G.S.X.
0.5369.10.97ZmAffx.836.1.S1_atAI770581--8e-1At5g16420pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.5065.70.97ZmAffx.1189.1.S1_atBE025258hypothetical protein LOC100274447-8e-1At3g04181unknown proteinO.I.H.G.S.X.
0.4861.30.96Zm.2459.1.S1_atBM380865hypothetical protein LOC100274521-1e+0At3g12370ribosomal protein L10 family proteinO.I.H.G.S.X.
0.4759.90.97Zm.1604.1.S1_atBF728928--4e+0At5g05650-O.I.H.G.S.X.
0.4658.40.97Zm.2240.1.A1_atAY107323.1hypothetical protein LOC100194242-3e-6At2g40830RHC1AO.I.H.G.S.X.
0.4658.40.97Zm.16211.1.S1_atCN845499--2e+0At2g25590agenet domain-containing proteinO.I.H.G.S.X.
0.4455.70.89Zm.2394.1.A1_atCO520170--5e-49At4g03430EMB2770 (EMBRYO DEFECTIVE 2770)O.I.H.G.S.X.
0.4455.70.95Zm.12429.1.A1_atCA403429conserved protein-3e-9At5g19300-O.I.H.G.S.X.
0.4455.70.98ZmAffx.1191.1.A1_atBE025269--5e-2At4g23720unknown proteinO.I.H.G.S.X.
0.4352.80.91Zm.3258.1.S1_atAY111069.1--1e+0At2g4051040S ribosomal protein S26 (RPS26A)O.I.H.G.S.X.
0.4352.80.93Zm.9597.1.A1_atAI065434--5e-1At3g52230unknown proteinO.I.H.G.S.X.
0.4352.80.96Zm.9206.1.A1_atBM267319hypothetical protein LOC100277714-5e+0At4g29930basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.4251.30.95ZmAffx.837.1.A1_atAI770584--3e-9Atmg00690-O.I.H.G.S.X.
0.4048.50.96Zm.2318.1.A1_atBM074442--9e-1At1g23710unknown proteinO.I.H.G.S.X.
0.3844.20.96Zm.9124.1.A1_atCO524970hypothetical protein LOC100279644-9e+0At4g01680MYB55 (myb domain protein 55)O.I.H.G.S.X.
0.3844.20.97Zm.2403.1.S1_atAY111997.1--3e+0At4g14385-O.I.H.G.S.X.
0.3844.20.97Zm.17700.1.S1_atCK369359--3e+0At5g20190bindingO.I.H.G.S.X.
0.3538.90.93Zm.13143.1.A1_atAY105306.1hypothetical protein LOC100191497-6e-1At3g24100-O.I.H.G.S.X.
0.3538.90.95ZmAffx.744.1.A1_s_atAI745738global transcription factor group E-1e-1At1g48300unknown proteinO.I.H.G.S.X.
0.3538.90.97ZmAffx.517.1.S1_a_atAI711601Hypothetical protein LOC100193129-8e-1At4g10290-O.I.H.G.S.X.
0.3336.00.94Zm.2315.1.A1_atBG841450nodulin-like protein-4e-4At3g18200nodulin MtN21 family proteinO.I.H.G.S.X.
0.3336.00.95Zm.17739.1.S1_atCK370728--1e+0At4g01897unknown proteinO.I.H.G.S.X.
0.3336.00.95Zm.1737.2.S1_atAW355997--8e-1At1g15140oxidoreductase NAD-binding domain-containing proteinO.I.H.G.S.X.
0.3233.40.93Zm.13362.1.S1_atCA828313calmodulin binding protein-3e-1At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)O.I.H.G.S.X.
0.3131.60.97Zm.6278.1.S1_atCF015568hypothetical protein LOC100277773-2e-2At5g53590auxin-responsive family proteinO.I.H.G.S.X.
0.2928.10.98ZmAffx.1079.1.S1_atAI948298--7e-1At3g01020ISU2 (ISCU-LIKE 2)O.I.H.G.S.X.
0.2724.60.95Zm.12657.1.A1_atCA826570--1e-1At1g11580PMEPCRA (METHYLESTERASE PCR A)O.I.H.G.S.X.
0.2724.60.98Zm.17695.1.S1_atCK370325hypothetical protein LOC100272438-1e+1At5g03455CDC25O.I.H.G.S.X.
0.2622.70.94Zm.14591.3.S1_x_atCK370424triosephosphate isomerase, cytosolic-3e-7At3g55440TPI (TRIOSEPHOSPHATE ISOMERASE)O.I.H.G.S.X.
0.2622.70.91Zm.509.1.S1_atAF096871.1calcium pump1-3e-11At1g07810ECA1 (ER-TYPE CA2+-ATPASE 1)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.298.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.098.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.598.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.598.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.798.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.893.5GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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