Co-expression analysis

Gene ID	Zm.18099.1.A1_at
Gene name	hypothetical protein LOC100216597
Homology with Arabidopsis	Similar to At5g48560: basic helix-loop-helix (bHLH) family protein (HF=2e-3)
Module size	6 genes
NF	0.62
%ile	83.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.18099.1.A1_at	CF631457	hypothetical protein LOC100216597	-	2e-3	At5g48560	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.98	ZmAffx.212.1.A1_at	AI670220	-	-	3e+0	At5g21010	ATBPM5 (BTB-POZ and MATH domain 5)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.98	Zm.17441.1.A1_at	BM268338	-	-	5e-1	At5g06910	ATJ6 (Arabidopsis J-domain protein 6)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.99	ZmAffx.392.1.S1_at	AI676820	-	-	1e+1	At2g31035	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.5051.1.A1_at	AI600543	nucleotide binding protein	-	5e+0	At5g09990	PROPEP5 (Elicitor peptide 5 precursor)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.98	ZmAffx.1213.1.A1_at	BU051439	-	-	2e-1	At3g10190	calmodulin, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.2	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.212919.1.S1_s_at, orthologous to the query gene, Zm.18099.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	PtpAffx.212919.1.S1_s_at	At5g48560	hypothetical protein	-	2e-16	At5g50915	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.202705.1.S1_at	At5g48560	hypothetical protein	-	1e-30	At2g20180	PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.201905.1.S1_at	At5g48560	sulfate/bicarbonate/oxalate exchanger and transporter sat-1	-	3e-13	At5g10180	AST68	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.159337.1.A1_at	At5g48560	hypothetical protein	-	4e-1	At1g20990	DC1 domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	PtpAffx.53113.1.S1_at	At5g48560	hypothetical protein	-	3e-36	At4g34530	CIB1 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.86800.1.A1_at	At5g48560	hypothetical protein	-	9e-2	At1g17745	PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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