Co-expression analysis

Gene ID	Zm.18099.1.A1_at
Gene name	hypothetical protein LOC100216597
Homology with Arabidopsis	Similar to At5g48560: basic helix-loop-helix (bHLH) family protein (HF=2e-3)
Module size	6 genes
NF	0.62
%ile	83.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.18099.1.A1_at	CF631457	hypothetical protein LOC100216597	-	2e-3	At5g48560	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.98	ZmAffx.212.1.A1_at	AI670220	-	-	3e+0	At5g21010	ATBPM5 (BTB-POZ and MATH domain 5)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.98	Zm.17441.1.A1_at	BM268338	-	-	5e-1	At5g06910	ATJ6 (Arabidopsis J-domain protein 6)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.99	ZmAffx.392.1.S1_at	AI676820	-	-	1e+1	At2g31035	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.5051.1.A1_at	AI600543	nucleotide binding protein	-	5e+0	At5g09990	PROPEP5 (Elicitor peptide 5 precursor)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.98	ZmAffx.1213.1.A1_at	BU051439	-	-	2e-1	At3g10190	calmodulin, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.2	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the soybean gene, Gma.9167.1.S1_at, orthologous to the query gene, Zm.18099.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	93.2	Gma.9167.1.S1_at	At5g48560	-	-	3e-18	At4g34530	CIB1 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1)	O.I.	H.G.	S.X.	Please select
0.50	71.7	Gma.11226.1.S1_at	At5g48560	-	-	4e-7	At3g56910	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.46	65.5	Gma.2009.1.S1_at	At5g48560	-	-	9e-50	At1g11860	aminomethyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.44	63.3	Gma.1650.2.S1_a_at	At5g48560	-	-	8e-28	At2g20890	PSB29	O.I.	H.G.	S.X.	Please select
0.44	63.3	Gma.4901.1.S1_at	At5g48560	-	-	6e-4	At2g21780	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	Gma.11210.1.S1_at	At5g48560	-	-	3e-23	At2g33450	50S ribosomal protein L28, chloroplast (CL28)	O.I.	H.G.	S.X.	Please select
0.41	58.1	Gma.3128.1.S1_at	At5g48560	-	-	1e-100	At2g21170	TIM (TRIOSEPHOSPHATE ISOMERASE)	O.I.	H.G.	S.X.	Please select
0.39	54.5	Gma.16053.2.S1_a_at	At5g48560	-	-	4e+0	At4g26070	MEK1 (MAP KINASE/ ERK KINASE 1)	O.I.	H.G.	S.X.	Please select
0.39	54.5	Gma.17409.1.S1_at	At5g48560	-	-	1e-9	At4g16390	-	O.I.	H.G.	S.X.	Please select
0.39	54.5	Gma.11183.1.S1_at	At5g48560	Putative plastid triose phophate translocator mRNA, partial cds; nuclear gene for plastid product	-	2e-88	At5g46110	APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.549.1.S1_at	At5g48560	-	-	6e-1	At5g42765	-	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.79438.2.S1_at	At5g48560	-	-	7e-55	Atcg00140	-	O.I.	H.G.	S.X.	Please select
0.30	40.4	Gma.11178.1.S1_at	At5g48560	-	-	1e-7	At1g29070	ribosomal protein L34 family protein	O.I.	H.G.	S.X.	Please select
0.28	39.0	Gma.13001.2.S1_a_at	At5g48560	-	-	5e-12	At4g17560	ribosomal protein L19 family protein	O.I.	H.G.	S.X.	Please select
0.25	32.6	Gma.7972.1.S1_at	At5g48560	-	-	2e+0	At4g24310	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.9	Gma.1956.2.S1_a_at	At5g48560	-	-	2e-2	At5g25600	-	O.I.	H.G.	S.X.	Please select
0.24	30.9	Gma.15866.1.A1_at	At5g48560	-	-	4e-38	At1g22700	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please select
0.15	18.7	GmaAffx.88399.1.S1_at	At5g48560	-	-	2e-49	At1g08520	CHLD	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage